View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16381_low_10 (Length: 376)
Name: NF16381_low_10
Description: NF16381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16381_low_10 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 7414821 - 7415198
Alignment:
| Q |
1 |
cacagattaataaacgtaaaaagcaagtaagaacatactaacataatttaatttggtatttcaaaactctacaataactagtagaggagaag---caaag |
97 |
Q |
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| T |
7414821 |
cacagagtaagaaacataaaaagcaagtaagaacatactaacataatttaatttggtattacaaaactctacaataactagtagag-agaattaacaaag |
7414919 |
T |
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| Q |
98 |
ggatatactactacactcattactaaatgtaaattccaacaatccaacatcatatacttcttcattatcatgtctacannnnnnncgctcttgtaattaa |
197 |
Q |
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| T |
7414920 |
ggatatactactacactcattactaaatgtaaattccaacaatccaacatcatatatttcttcattatcatgcctacattttttttgctcttgtaattaa |
7415019 |
T |
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| Q |
198 |
gtatgatgacattaaactcacacaaatccaattatgttgaattctcaaccttattaaacacaaaacctaagtagagaaaatactcaaagggagtaaagat |
297 |
Q |
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| T |
7415020 |
gtatgatgacattaaactcacacaaatccaattatgttgaattctcaaccttattaaacacaaaacctaagtagagaaaatactcaaagggagtaaagat |
7415119 |
T |
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| Q |
298 |
gatcagcaagtctaggctccacaacaatttctaatggtattttcttaggtgtagaaagcccaaaaatctcctccatatt |
376 |
Q |
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| T |
7415120 |
gatcagcaagtctaggctccacaacaatttctaatggtattttcttaggtgtagaaagcccaaaaatctcctccatatt |
7415198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 285 - 376
Target Start/End: Original strand, 7422766 - 7422857
Alignment:
| Q |
285 |
agggagtaaagatgatcagcaagtctaggctccacaacaatttctaatggtattttcttaggtgtagaaagcccaaaaatctcctccatatt |
376 |
Q |
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| T |
7422766 |
agggagtaaagatgatgaggaagtctaggctccacaacaacttctagtggtattttcctaggagtagtcagcccaaaaatctcctccatatt |
7422857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 7429161 - 7429263
Alignment:
| Q |
274 |
aaaatactcaaagggagtaaagatgatcagcaagtctaggctccacaacaatttctaatggtattttcttaggtgtagaaagcccaaaaatctcctccat |
373 |
Q |
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| T |
7429161 |
aaaatacttagaggcaataaagatgatacggaagtttaggctccaaaacaacttctaatggtattttcttaggtgtagtgagcccaaaaatctcctccat |
7429260 |
T |
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| Q |
374 |
att |
376 |
Q |
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||| |
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| T |
7429261 |
att |
7429263 |
T |
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