View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16381_low_18 (Length: 235)
Name: NF16381_low_18
Description: NF16381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16381_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 41861430 - 41861233
Alignment:
| Q |
11 |
gaagcataggtcccaaaacaaggtgaagaattctatgagccaaaggtataccagcacacattcttctaccagcaccaaatggtataaactcataatgttg |
110 |
Q |
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| T |
41861430 |
gaagcaaagatcccaaaacaaggtgaagaattctatgagccaaaggtataccagcacacattcttctaccagcaccaaatggtataaactcataatgttg |
41861331 |
T |
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| Q |
111 |
tcctctataatcactcttataactcttattattgatatcacaaaatctctcaggtttgaaaaccaatggttcatcccaaacatcagggtctcttccaatt |
210 |
Q |
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| T |
41861330 |
tcctctataatcactc---------ttattattgatatcacaaaatctctcaggtttgaaaaccaatggttcatcccaaacatcagggtctcttccaatt |
41861240 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 35048232 - 35048188
Alignment:
| Q |
66 |
acacattcttctaccagcaccaaatggtataaactcataatgttg |
110 |
Q |
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| T |
35048232 |
acacattcttctacccgcaccaaatggaatcaactcaaaatgttg |
35048188 |
T |
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