View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16381_low_19 (Length: 220)

Name: NF16381_low_19
Description: NF16381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16381_low_19
NF16381_low_19
[»] chr3 (4 HSPs)
chr3 (1-220)||(11006242-11006461)
chr3 (1-220)||(11024817-11025036)
chr3 (1-220)||(11015805-11016024)
chr3 (89-220)||(47452275-47452406)
[»] chr8 (6 HSPs)
chr8 (5-215)||(4032200-4032410)
chr8 (89-209)||(12199897-12200017)
chr8 (89-209)||(12444325-12444445)
chr8 (101-208)||(12194892-12194999)
chr8 (101-208)||(12439320-12439427)
chr8 (91-184)||(15348477-15348570)
[»] chr4 (32 HSPs)
chr4 (6-220)||(7770983-7771197)
chr4 (101-220)||(7822548-7822667)
chr4 (101-218)||(7813061-7813178)
chr4 (91-220)||(7904611-7904740)
chr4 (6-220)||(7774114-7774328)
chr4 (101-218)||(7800218-7800335)
chr4 (6-220)||(7789668-7789882)
chr4 (92-220)||(7238091-7238219)
chr4 (91-215)||(45372427-45372551)
chr4 (6-220)||(7877299-7877513)
chr4 (91-220)||(7907904-7908033)
chr4 (91-217)||(48862823-48862952)
chr4 (89-220)||(49044597-49044728)
chr4 (91-219)||(48170956-48171087)
chr4 (103-220)||(48902529-48902646)
chr4 (91-219)||(48156797-48156925)
chr4 (91-220)||(33134193-33134325)
chr4 (91-188)||(48891020-48891117)
chr4 (92-218)||(7765202-7765328)
chr4 (91-204)||(37827364-37827477)
chr4 (82-218)||(45366579-45366718)
chr4 (91-220)||(49041508-49041637)
chr4 (91-220)||(50251178-50251307)
chr4 (119-185)||(48735713-48735779)
chr4 (114-220)||(50668622-50668728)
chr4 (89-217)||(48148050-48148181)
chr4 (118-183)||(49048996-49049061)
chr4 (118-218)||(48898303-48898403)
chr4 (92-188)||(7786054-7786150)
chr4 (61-220)||(47207513-47207672)
chr4 (91-218)||(48870123-48870250)
chr4 (91-218)||(48885809-48885936)
[»] chr6 (2 HSPs)
chr6 (89-220)||(21015355-21015486)
chr6 (67-160)||(21979990-21980083)
[»] chr5 (5 HSPs)
chr5 (53-201)||(29695750-29695898)
chr5 (91-208)||(29687642-29687759)
chr5 (101-218)||(1812006-1812123)
chr5 (118-177)||(29712866-29712925)
chr5 (119-171)||(178647-178699)
[»] chr1 (5 HSPs)
chr1 (91-219)||(24309757-24309885)
chr1 (101-219)||(24339994-24340112)
chr1 (101-183)||(24322078-24322160)
chr1 (122-219)||(24415417-24415514)
chr1 (101-159)||(24366795-24366853)
[»] scaffold0508 (1 HSPs)
scaffold0508 (50-219)||(11842-12011)
[»] chr7 (1 HSPs)
chr7 (152-220)||(48883361-48883429)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11006242 - 11006461
Alignment:
Q  1 aagcgatgcttcaaaatctatggatcgaatttcaagagctggagttgacaagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11006242 aagcgatgcttcaaaatctatggatcgaatttcaagagctggagttgacatgaacacaattctattagtgtgtgttctagtggaaaggtcaaaatgcgat 11006341  T
Q  101 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11006342 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 11006441  T
Q  201 tcaattcatgaggcagatac 220  Q
    ||||||||||||||||||||    
T  11006442 tcaattcatgaggcagatac 11006461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11024817 - 11025036
Alignment:
Q  1 aagcgatgcttcaaaatctatggatcgaatttcaagagctggagttgacaagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgat 100  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||||||||||||||| || |||||| ||||||||||||    
T  11024817 aagcgatgcttcaaaatctatggatcgagtttccagagctagagttgacatgaacacaattctattagtgtgtgttgcaggggaaagttcaaaatgcgat 11024916  T
Q  101 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 200  Q
    |||||||||| | ||||||||||||||| |||||||||||||||||| || ||||||||||| || ||||||||||| |||||||||| |||||||||||    
T  11024917 tttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtatga 11025016  T
Q  201 tcaattcatgaggcagatac 220  Q
    ||||||||||||||| ||||    
T  11025017 tcaattcatgaggcaaatac 11025036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11015805 - 11016024
Alignment:
Q  1 aagcgatgcttcaaaatctatggatcgaatttcaagagctggagttgacaagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgat 100  Q
    |||||| ||||||||||| ||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  11015805 aagcgacgcttcaaaatcaatggatcgagtttcaagagctagagttgacatgaacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgat 11015904  T
Q  101 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 200  Q
    |||||||||| | ||||||||||||||| |||| ||||||||||||| || ||||||||||| || ||||||||||| |||||||||| ||||||||| |    
T  11015905 tttgcaaagttatgatcagagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtatta 11016004  T
Q  201 tcaattcatgaggcagatac 220  Q
    ||||||||||||||||||||    
T  11016005 tcaattcatgaggcagatac 11016024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 220
Target Start/End: Original strand, 47452275 - 47452406
Alignment:
Q  89 tcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaaca 188  Q
    |||||||| | |||||||||| ||||||||||||||||||  |||||||||||| |||  |||||||| |||| ||| ||||||||||||||||||| ||    
T  47452275 tcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcacca 47452374  T
Q  189 agatttgtatgatcaattcatgaggcagatac 220  Q
    |||| || || ||||||||| |||| ||||||    
T  47452375 agatctggattatcaattcaagaggtagatac 47452406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 4032200 - 4032410
Alignment:
Q  5 gatgcttcaaaatctatggatcgaatttcaagagctggagttgacaagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttg 104  Q
    |||| ||| |||||||| |||||| ||| ||||  ||||||||| | || ||||| ||||| | |||||||| ||| || ||  | ||||||||| ||||    
T  4032200 gatgtttcgaaatctatagatcgagttttaagatttggagttgatatgatcacaagtctatgaatgtgtgttttagaggtaatttgaaaatgcgaatttg 4032299  T
Q  105 caaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaa 204  Q
    |||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||  || |  ||||  |||||||| ||||||||    
T  4032300 caaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttcattggtagtctcagtaagatttggatgatcaa 4032399  T
Q  205 ttcatgaggca 215  Q
    |||||||||||    
T  4032400 ttcatgaggca 4032410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 12200017 - 12199897
Alignment:
Q  89 tcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaaca 188  Q
    |||| |||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||| ||    
T  12200017 tcaacatgcgaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagca 12199918  T
Q  189 agatttgtatgatcaattcat 209  Q
     |||||| ||||| |||||||    
T  12199917 ggatttgaatgattaattcat 12199897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 12444445 - 12444325
Alignment:
Q  89 tcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaaca 188  Q
    |||| |||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||| ||    
T  12444445 tcaacatgcgaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagca 12444346  T
Q  189 agatttgtatgatcaattcat 209  Q
     |||||| ||||| |||||||    
T  12444345 ggatttgaatgattaattcat 12444325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 12194999 - 12194892
Alignment:
Q  101 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 200  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||  || ||||||| || ||| ||||||||||||||||||| || |||||| ||||    
T  12194999 tttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatga 12194900  T
Q  201 tcaattca 208  Q
    | ||||||    
T  12194899 ttaattca 12194892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 12439427 - 12439320
Alignment:
Q  101 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 200  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||  || ||||||| || ||| ||||||||||||||||||| || |||||| ||||    
T  12439427 tttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatga 12439328  T
Q  201 tcaattca 208  Q
    | ||||||    
T  12439327 ttaattca 12439320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 15348570 - 15348477
Alignment:
Q  91 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctc 184  Q
    |||||| || ||||| |||| |||||||||||||||||  ||||| ||||||||||| || |||||||||||||| ||||||||||| ||||||    
T  15348570 aaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaacctc 15348477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 7771197 - 7770983
Alignment:
Q  6 atgcttcaaaatctatggatcgaatttcaagagctggagttgacaagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttgc 105  Q
    |||||||||||||||| |||||||||||| ||| | ||||||| | | | | || ||||  ||||||||||| || || ||| | |||||| || ||| |    
T  7771197 atgcttcaaaatctatagatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcagaggcaagttgaaaatgtgaattttc 7771098  T
Q  106 aaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaat 205  Q
    |||||||||||||||||||||||  ||||| ||||||||||| || ||||||| |||||| ||||||||||||||||||| ||  ||||| || || | |    
T  7771097 aaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattattagt 7770998  T
Q  206 tcatgaggcagatac 220  Q
    |||||||||||||||    
T  7770997 tcatgaggcagatac 7770983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 7822667 - 7822548
Alignment:
Q  101 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 200  Q
    ||||||||||| ||||||||||||||||  |||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| | || |    
T  7822667 tttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggatta 7822568  T
Q  201 tcaattcatgaggcagatac 220  Q
    |||| | |||||||||||||    
T  7822567 tcaaatgatgaggcagatac 7822548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 7813178 - 7813061
Alignment:
Q  101 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 200  Q
    ||||||||||| || |||||||||||||  |||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| | || |    
T  7813178 tttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggatta 7813079  T
Q  201 tcaattcatgaggcagat 218  Q
    |||| |||||||||||||    
T  7813078 tcaaatcatgaggcagat 7813061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 7904740 - 7904611
Alignment:
Q  91 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 190  Q
    |||||| || ||||||||||||||||||||||||||||  |||||| ||||||||||||| |||||||||||||| |||||||| ||||||| || ||||    
T  7904740 aaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaaccacatcaag 7904641  T
Q  191 atttgtatgatcaattcatgaggcagatac 220  Q
    ||||| || ||||||||| |||| ||||||    
T  7904640 atttgaataatcaattcacgaggaagatac 7904611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 7774114 - 7774328
Alignment:
Q  6 atgcttcaaaatctatggatcgaatttcaagagctggagttgacaagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttgc 105  Q
    ||||||||||| |||| |||||||||||| ||| | ||| ||| | | ||| |||||||  |||||| ||||| ||||  || | |||||| || |||||    
T  7774114 atgcttcaaaacctatagatcgaatttcatgagatagagatgatatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgc 7774213  T
Q  106 aaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaat 205  Q
    ||| || ||||||||||||||||  ||||||  |||||||||||| |||||| | ||||| ||||||||||||| || || ||||||||| || ||||||    
T  7774214 aaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccggcagccgcatcaagatttgaataatcaat 7774313  T
Q  206 tcatgaggcagatac 220  Q
    |||||||| ||||||    
T  7774314 tcatgaggaagatac 7774328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 7800335 - 7800218
Alignment:
Q  101 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 200  Q
    ||||||||| | |||||||||| |||||  |||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| | || |    
T  7800335 tttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggatta 7800236  T
Q  201 tcaattcatgaggcagat 218  Q
    |||| |||||||||||||    
T  7800235 tcaaatcatgaggcagat 7800218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 7789882 - 7789668
Alignment:
Q  6 atgcttcaaaatctatggatcgaatttcaagagctggagttgacaagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttgc 105  Q
    |||||||||||||||| |||| ||||||| ||| | ||||||| |   | | || ||||  |||||||||||  | || ||| | |||||| || ||| |    
T  7789882 atgcttcaaaatctatagatcaaatttcatgagattgagttgatatacataaaaatctacaagtgtgtgttgcggaggcaagttgaaaatgtgaattttc 7789783  T
Q  106 aaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaat 205  Q
    |||||||||||| ||||||| ||  ||||| ||||||||||| || ||||||| |||||| ||||||||||||||||||| ||  ||||| || |||| |    
T  7789782 aaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattatcagt 7789683  T
Q  206 tcatgaggcagatac 220  Q
    |||||||||||||||    
T  7789682 tcatgaggcagatac 7789668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 92 - 220
Target Start/End: Original strand, 7238091 - 7238219
Alignment:
Q  92 aaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaaga 191  Q
    ||||| || |||||||||||||| |||||||||||||  ||||| |||||||||||||| |||||||  ||||| |||||||| |||||||||| ||  |    
T  7238091 aaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacctcatcagaa 7238190  T
Q  192 tttgtatgatcaattcatgaggcagatac 220  Q
    |||| ||||| | ||||||||||||||||    
T  7238191 tttggatgattagttcatgaggcagatac 7238219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 45372427 - 45372551
Alignment:
Q  91 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 190  Q
    |||||| || |||||||| |||||||||||||||| ||  ||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |  |      
T  45372427 aaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagtaga 45372526  T
Q  191 atttgtatgatcaattcatgaggca 215  Q
    ||||| || ||||||||||||||||    
T  45372527 atttgaatcatcaattcatgaggca 45372551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 7877513 - 7877299
Alignment:
Q  6 atgcttcaaaatctatggatcgaatttcaagagctggagttgacaagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttgc 105  Q
    ||||||||||| |||| |||||||||||| ||| | ||| ||| | | ||| |||||||  |||||| ||||| ||||  || | |||||| || |||||    
T  7877513 atgcttcaaaacctattgatcgaatttcatgagatagaggtgatatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgc 7877414  T
Q  106 aaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaat 205  Q
    ||| |  ||||||||||||||||  ||||||  ||||||||  || |||||||||||||| ||||||||| ||||||  | || |||||| || ||||||    
T  7877413 aaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccagcaaccaaatcaggatttggataatcaat 7877314  T
Q  206 tcatgaggcagatac 220  Q
    |||||||| ||||||    
T  7877313 tcatgaggaagatac 7877299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 7908033 - 7907904
Alignment:
Q  91 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 190  Q
    |||||| || |||||||| || ||| ||||||||||||  ||||||||||||| |||| ||||||||||| |||| |||||||||||||||||||  | |    
T  7908033 aaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctcagtagg 7907934  T
Q  191 atttgtatgatcaattcatgaggcagatac 220  Q
    || || |  |||||||||||||| ||||||    
T  7907933 atctggaaaatcaattcatgaggaagatac 7907904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 48862952 - 48862823
Alignment:
Q  91 aaaatgcgattttgcaaagtgaggatca---gagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaac 187  Q
    |||||| || ||||||||||||||||||   ||||||||||  ||||| ||||| ||||| || |||||||| ||||| ||||||||||| ||||| | |    
T  48862952 aaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggtaaccttagc 48862853  T
Q  188 aagatttgtatgatcaattcatgaggcaga 217  Q
    | |||| | |||||||||||||||||||||    
T  48862852 aggattaggatgatcaattcatgaggcaga 48862823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 220
Target Start/End: Original strand, 49044597 - 49044728
Alignment:
Q  89 tcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaaca 188  Q
    |||||||| || ||||||||||| |  | |||||||||||  |||||| |||||||||||||||||||||||| ||| ||| |||| |||||||||| ||    
T  49044597 tcaaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagca 49044696  T
Q  189 agatttgtatgatcaattcatgaggcagatac 220  Q
      ||  | |||||||| |||||||||||||||    
T  49044697 gaataaggatgatcaagtcatgaggcagatac 49044728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 48170956 - 48171087
Alignment:
Q  91 aaaatgcgattttgcaaagtgaggatca---gagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaac 187  Q
    ||||||||| ||||||||||||||||||   ||||||||||  ||||| |||||||||||||| |||||||||| ||| ||||||||||  ||||||| |    
T  48170956 aaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccgataacctcagc 48171055  T
Q  188 aagatttgtatgatcaattcatgaggcagata 219  Q
    |  ||||| |  ||||||||| ||| ||||||    
T  48171056 agaatttgaactatcaattcaagagccagata 48171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 220
Target Start/End: Complemental strand, 48902646 - 48902529
Alignment:
Q  103 tgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatc 202  Q
    |||||||||  ||||||| |||||||  ||||| |||||||||||||| |||||||| || || ||||| |||||||||| |  ||| ||||| ||||||    
T  48902646 tgcaaagtgctgatcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatc 48902547  T
Q  203 aattcatgaggcagatac 220  Q
    ||||||||||| ||||||    
T  48902546 aattcatgaggtagatac 48902529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 48156797 - 48156925
Alignment:
Q  91 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 190  Q
    |||||| || |||||||| |||| ||| ||||||||||  ||||| ||||||||||| ||||||||||||| ||| ||||||||||| ||||  || | |    
T  48156797 aaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaaagg 48156896  T
Q  191 atttgtatgatcaattcatgaggcagata 219  Q
    ||||| || ||||||||| | ||||||||    
T  48156897 atttgaattatcaattcaagtggcagata 48156925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 91 - 220
Target Start/End: Original strand, 33134193 - 33134325
Alignment:
Q  91 aaaatgcgattttgcaaagtgaggatca---gagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaac 187  Q
    |||||| || ||||||||||||||||||   ||||||||||  || || | ||||||||| || |||||||| ||||| ||||||||||| || ||||||    
T  33134193 aaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaatctcaac 33134292  T
Q  188 aagatttgtatgatcaattcatgaggcagatac 220  Q
    |  ||  | ||||||||||||||||||||||||    
T  33134293 agaataaggatgatcaattcatgaggcagatac 33134325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 48891117 - 48891020
Alignment:
Q  91 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaaca 188  Q
    ||||||||| |||||||| |||||||| |||| |||||  ||||| ||||||||||| || |||||||||||||| ||||| ||||  ||||||||||    
T  48891117 aaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataacctcaaca 48891020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 218
Target Start/End: Complemental strand, 7765328 - 7765202
Alignment:
Q  92 aaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaaga 191  Q
    ||||| || ||||||||||||||||||||||||| ||  |||||| |||||||||  |||||||||  ||  || ||||||||||| ||||||||||  |    
T  7765328 aaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaa 7765229  T
Q  192 tttgtatgatcaattcatgaggcagat 218  Q
     ||| ||||||| ||| ||||| ||||    
T  7765228 attgaatgatcagttcttgaggaagat 7765202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 37827364 - 37827477
Alignment:
Q  91 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 190  Q
    |||||| || ||||||||||  |||| ||| |||||||||||||||||||||||||| ||  | |||| |||||| |||||||| | ||||||||  |||    
T  37827364 aaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaacttataagagacttcactgacaacctcagtaag 37827463  T
Q  191 atttgtatgatcaa 204  Q
    ||||  ||||||||    
T  37827464 atttcgatgatcaa 37827477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 45366579 - 45366718
Alignment:
Q  82 ggaaaggtcaaaatgcgattttgcaaagtgaggatca---gagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggc 178  Q
    |||||| | |||||| || ||||||||||| | ||||   ||||||||||  |||||  |||||||||| ||||||||||||||||| |||||||| ||     
T  45366579 ggaaagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggt 45366678  T
Q  179 aacctcaacaagatttgtatgatcaattcatgaggcagat 218  Q
    ||||| |  | |||||| || |||||||||||||| ||||    
T  45366679 aaccttagtaggatttggatcatcaattcatgaggaagat 45366718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 220
Target Start/End: Original strand, 49041508 - 49041637
Alignment:
Q  91 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 190  Q
    |||||| || |||||||| || ||||||||||||||||  ||||| ||||| ||||| || |||||||  ||||| |||||||| ||||| ||||  |      
T  49041508 aaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcactggcaatctcattaga 49041607  T
Q  191 atttgtatgatcaattcatgaggcagatac 220  Q
    ||| | |||||||||||||||| |||||||    
T  49041608 attaggatgatcaattcatgagacagatac 49041637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 220
Target Start/End: Original strand, 50251178 - 50251307
Alignment:
Q  91 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 190  Q
    ||||||| | |||||| |||| ||||||||||||||||  ||||| |||||| |||| ||||| ||  ||||||| | |||||| |||||||| |  ||     
T  50251178 aaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacccactttaattgtataagagccttcactggcaacctaactaaa 50251277  T
Q  191 atttgtatgatcaattcatgaggcagatac 220  Q
    |||||  |||||||||| ||||||||||||    
T  50251278 atttgagtgatcaattcgtgaggcagatac 50251307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 48735713 - 48735779
Alignment:
Q  119 gagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctca 185  Q
    ||||||||||  ||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||    
T  48735713 gagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacctca 48735779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 50668728 - 50668622
Alignment:
Q  114 gatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgagg 213  Q
    |||| ||||| ||||  ||||| || |||||||| |||||||||||||||||  | ||||| |||||||||| ||| ||||| ||||||||||| | | |    
T  50668728 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctcaccaaaatttgaatgatcaattcgtaatg 50668629  T
Q  214 cagatac 220  Q
    |||||||    
T  50668628 cagatac 50668622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 217
Target Start/End: Original strand, 48148050 - 48148181
Alignment:
Q  89 tcaaaatgcgattttgcaaagtgaggatca---gagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctca 185  Q
    |||||||| || ||||| ||||||||||||   ||||||||||  ||||| |||||||| ||||| |||||||| ||||| |||||||| || |||||      
T  48148050 tcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggtaaccttg 48148149  T
Q  186 acaagatttgtatgatcaattcatgaggcaga 217  Q
    | | |||||| |  |||||||||| |||||||    
T  48148150 aaaggatttgaactatcaattcatcaggcaga 48148181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 49048996 - 49049061
Alignment:
Q  118 agagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacct 183  Q
    |||||||||||  |||||| |||||||||||||||||||||||| ||| ||| ||||| |||||||    
T  49048996 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcaccagcaacct 49049061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 48898403 - 48898303
Alignment:
Q  118 agagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcaga 217  Q
    ||||||||| |  ||||| |||||||||||||||||||||||| |||| |||||||| || |  |||| ||  ||||| |||| |||||||||||| |||    
T  48898403 agagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggtagactcagcagaatttgaatgaccaattcatgaggaaga 48898304  T
Q  218 t 218  Q
    |    
T  48898303 t 48898303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 7786150 - 7786054
Alignment:
Q  92 aaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaaca 188  Q
    ||||| || |||||||| |||||||||||||||| ||  | ||||  ||||||||| || |||||   |||||| || |||||||||||||||||||    
T  7786150 aaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaacaatataagagatttcaccggcaacctcaaca 7786054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 220
Target Start/End: Complemental strand, 47207672 - 47207513
Alignment:
Q  61 tctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgt 160  Q
    ||||| |||||||||| | |||| ||| |||||||| || || | ||| || || || ||||| ||||  || || ||||| ||||||| ||| ||||||    
T  47207672 tctatgagtgtgtgttttggtggtaagttcaaaatgtgaattagaaaaatgtgggtcggagatgagagaaaatcaagacttccaaacactcttaaaacgt 47207573  T
Q  161 ataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagatac 220  Q
    ||||| ||||||||||| |||   || | ||||   ||||||||||||||||| ||||||    
T  47207572 ataagagacttcaccggtaactataataggattaagatgatcaattcatgaggaagatac 47207513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 48870250 - 48870123
Alignment:
Q  91 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 190  Q
    |||||| || ||||||||  | ||||| |||||||||   ||||| ||||||||||| || |||||||| ||||| || |||||||| | ||||| ||      
T  48870250 aaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcaga 48870151  T
Q  191 atttgtatgatcaattcatgaggcagat 218  Q
    ||||| |  |||||||||||| ||||||    
T  48870150 atttgaactatcaattcatgatgcagat 48870123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 48885936 - 48885809
Alignment:
Q  91 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 190  Q
    |||||| || ||||||||  | ||||| |||||||||   ||||| ||||||||||| || |||||||| ||||| || |||||||| | ||||| ||      
T  48885936 aaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcaga 48885837  T
Q  191 atttgtatgatcaattcatgaggcagat 218  Q
    ||||| |  |||||||||||| ||||||    
T  48885836 atttgaactatcaattcatgatgcagat 48885809  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 21015486 - 21015355
Alignment:
Q  89 tcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaaca 188  Q
    |||||||| ||  |||||||||| |  | |||||||||||  ||| || |||||||||||||||||||||||| ||| ||| | ||||| ||||||||||    
T  21015486 tcaaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaaca 21015387  T
Q  189 agatttgtatgatcaattcatgaggcagatac 220  Q
    | ||| | ||||||||||| ||||||||||||    
T  21015386 aaattaggatgatcaattcttgaggcagatac 21015355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 21979990 - 21980083
Alignment:
Q  67 agtgtgtgttgtagtggaaaggtcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgt 160  Q
    |||||||||||  | || ||| |||||||| || || |||||||  |||| |||||| ||||  ||||| ||||||||||||||||||||||||    
T  21979990 agtgtgtgttgcggcggcaagatcaaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgt 21980083  T

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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 201
Target Start/End: Complemental strand, 29695898 - 29695750
Alignment:
Q  53 aacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacact 152  Q
    |||| ||||||||| |||||||| |  |||| ||| | |||||| || |||||||||||||| | ||| ||||||| ||||||| |||||||||| || |    
T  29695898 aacataattctattcgtgtgtgtagcggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatt 29695799  T
Q  153 tgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgat 201  Q
    ||||||| ||||| ||||| || || ||||| || | |||||| |||||    
T  29695798 tgaaacgaataagagacttgactggtaaccttaataggatttgaatgat 29695750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 29687759 - 29687642
Alignment:
Q  91 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 190  Q
    |||||| || |||||||||||||| | ||| || ||||  ||||| |||||||||||||||||||| |||||||| |||||||| || ||| | |  | |    
T  29687759 aaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaactttagaagg 29687660  T
Q  191 atttgtatgatcaattca 208  Q
    ||||| ||||||||||||    
T  29687659 atttgaatgatcaattca 29687642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 1812123 - 1812006
Alignment:
Q  101 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 200  Q
    ||||||||||| ||||  ||||||||||  |||||| |||||||||| || ||| ||||||| ||  ||||||| || ||||||||||| ||||| | ||    
T  1812123 tttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacctcaacaaaatttgaacga 1812024  T
Q  201 tcaattcatgaggcagat 218  Q
    ||| ||| ||||| ||||    
T  1812023 tcagttcctgaggaagat 1812006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 29712866 - 29712925
Alignment:
Q  118 agagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccgg 177  Q
    |||||||||||  |||||| |||||||||| ||||||||||| ||||| |||||||||||    
T  29712866 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 29712925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 178699 - 178647
Alignment:
Q  119 gagataagagttaaccatgacttacaaacacacttgaaacgtataagtgactt 171  Q
    ||||| |||| |||||| |||||||||||||| |||||||| ||||| |||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagactt 178647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 24309885 - 24309757
Alignment:
Q  91 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 190  Q
    |||||| || ||||||||||||| ||||||||||||||  |||||| ||||||||||  | |||||||| ||||| ||||| ||||| || || |  |||    
T  24309885 aaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaatcttactaag 24309786  T
Q  191 atttgtatgatcaattcatgaggcagata 219  Q
    ||||   |||||||||||| |||||||||    
T  24309785 attttggtgatcaattcatcaggcagata 24309757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 24340112 - 24339994
Alignment:
Q  101 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 200  Q
    ||||||||||||  |||||||||||| |  |||||||||||||||||| | |||||||| ||||| ||||| ||||| ||||| |  |||||||   |||    
T  24340112 tttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagacttaaccggtaaccttactaagattttggtga 24340013  T
Q  201 tcaattcatgaggcagata 219  Q
    ||||||||| ||| |||||    
T  24340012 tcaattcatcaggaagata 24339994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 24322160 - 24322078
Alignment:
Q  101 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacct 183  Q
    ||||||||  ||||||  ||||||||||  ||||| ||||||||||| || |||||||| ||||| ||||||||| |||||||    
T  24322160 tttgcaaaacgaggatttgagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaacct 24322078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 24415514 - 24415417
Alignment:
Q  122 ataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagata 219  Q
    |||||||  ||||| ||||||| ||| || |||||||| ||||| ||||| ||||| || ||||| | ||||||  |||||||||||| |||||||||    
T  24415514 ataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaatctcaataggatttgggtgatcaattcatcaggcagata 24415417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 24366853 - 24366795
Alignment:
Q  101 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacg 159  Q
    |||||||||| |||||  ||||||||||  ||||||||||| |||||||| ||||||||    
T  24366853 tttgcaaagtaaggatttgagataagagaaaaccatgacttgcaaacacatttgaaacg 24366795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 219
Target Start/End: Complemental strand, 12011 - 11842
Alignment:
Q  50 aagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacac 149  Q
    ||||||| ||| |||  ||||||||||| ||  | ||| | |||||| || ||||||||||||  ||||||||||||||  |||||||||||||||||      
T  12011 aagaacagaatcctacgagtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacgg 11912  T
Q  150 acttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagata 219  Q
    | |||||||| ||||| ||||| | ||| ||||| |  |||||||   |||||||||||| ||| |||||    
T  11911 atttgaaacggataagagacttaatcggtaaccttactaagattttggtgatcaattcatcaggaagata 11842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 48883429 - 48883361
Alignment:
Q  152 ttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagatac 220  Q
    |||||||||| ||| ||||||||  | ||||||| ||| ||||| ||||| |||||| |||||||||||    
T  48883429 ttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagatac 48883361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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