View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16381_low_2 (Length: 606)

Name: NF16381_low_2
Description: NF16381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16381_low_2
NF16381_low_2
[»] chr2 (1 HSPs)
chr2 (1-576)||(2377559-2378131)
[»] chr4 (2 HSPs)
chr4 (411-462)||(36766460-36766511)
chr4 (103-286)||(36766683-36766866)
[»] chr6 (1 HSPs)
chr6 (358-391)||(33817355-33817388)
[»] chr5 (1 HSPs)
chr5 (358-391)||(14004334-14004367)
[»] chr1 (1 HSPs)
chr1 (362-391)||(15920245-15920274)
[»] chr7 (1 HSPs)
chr7 (355-391)||(4624512-4624548)
[»] chr3 (1 HSPs)
chr3 (321-389)||(49598417-49598485)


Alignment Details
Target: chr2 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Original strand, 2377559 - 2378131
Alignment:
Q  1 aaactgtggaatctgttgtaatagtgaagaaatctcaactttctatgaatgaggctgaagactcttgtgcagacactaataatagtacatatgatgagac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  2377559 aaactgtggaatctgttgtaatagtgaagaaatctcaactttctatgaatgaggctgaaga---tcgtgcagacactaataatagtacatatgatgagac 2377655  T
Q  101 attacctgaaattgaagcaagattttgtgaaagaagtgtcctcataagactacattgtttgaagagtcaaggagttattgagaaaattatgagtgaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2377656 attacctgaaattgaagcaagattttgtgaaagaagtgtcctcataagactacattgtttgaagagtcaaggagttattgagaaaattatgagtgaaatt 2377755  T
Q  201 gagaaacttcatctaaaagtcatcaatagcagttccttgacttttgggaatttcacccttgatataaccatcattgctcaggtaatttcactacaccgtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2377756 gagaaacttcatctaaaagtcatcaatagcagttccttgacttttgggaatttcacccttgatataaccatcattgctcaggtaatttcactacaccgtc 2377855  T
Q  301 accaaataataatcaatagaatatgtgactttaaaagtagttaggatgaaaactaaatatttttaatgatctcacgattatgattgattgaatatggaan 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2377856 accaaataataatcaatagaatatgtgactttaaaagtagttaggatgaaaactaaatatttttaatgatctcacgattatgattgattgaatatggaat 2377955  T
Q  401 nnnnnnncccgcaatttgcagatggatgtgggattttgcatgacggtgaaggatcttgtgaggaagatacgttcagcatattcatctttcatgtgaacaa 500  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2377956 tttttttcccgcaatttgcagatggatgtgggattttgcatgacggtgaaggatcttgtgaggaagatacgttcagcatattcatctttcatgtgaacaa 2378055  T
Q  501 agtttcatgttttgttcactataaataaaaccataaagcagttaaattttatgctctttataagtaataatcatgt 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2378056 agtttcatgttttgttcactataaataaaaccataaagcagttaaattttatgctctttataagtaataatcatgt 2378131  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 411 - 462
Target Start/End: Complemental strand, 36766511 - 36766460
Alignment:
Q  411 gcaatttgcagatggatgtgggattttgcatgacggtgaaggatcttgtgag 462  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  36766511 gcaatttgcagatggatgtggaattttgcatgacagtgaaggatcttgtgag 36766460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 286
Target Start/End: Complemental strand, 36766866 - 36766683
Alignment:
Q  103 tacctgaaattgaagcaagattttgtgaaagaagtgtcctcataagactacattgtttgaagagtcaaggagttattgagaaaattatgagtgaaattga 202  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||||| | ||||||  ||| |   |||||||| | || ||||  ||     |||||||    
T  36766866 taccagaaattgaagcaagattttgtgatagaaatgtcctcataagagttcattgtgagaaaatcaaaggagttgtggaaaaaacaatccacaaaattga 36766767  T
Q  203 gaaacttcatctaaaagtcatcaatagcagttccttgacttttgggaatttcacccttgatataaccatcattgctcaggtaat 286  Q
    ||||||  |||||||||||| ||||||||||| | |||| ||||| | ||   | ||||||||||| || ||||| ||||||||    
T  36766766 gaaactcaatctaaaagtcaccaatagcagtttcatgacatttggaagttgtgcacttgatataacaattattgcacaggtaat 36766683  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 391
Target Start/End: Original strand, 33817355 - 33817388
Alignment:
Q  358 tatttttaatgatctcacgattatgattgattga 391  Q
    ||||||||||||||| ||||||||||||||||||    
T  33817355 tatttttaatgatctaacgattatgattgattga 33817388  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 14004367 - 14004334
Alignment:
Q  358 tatttttaatgatctcacgattatgattgattga 391  Q
    |||||| |||||||||||||||||||||||||||    
T  14004367 tattttaaatgatctcacgattatgattgattga 14004334  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 391
Target Start/End: Original strand, 15920245 - 15920274
Alignment:
Q  362 tttaatgatctcacgattatgattgattga 391  Q
    ||||||||||||||||||||||||||||||    
T  15920245 tttaatgatctcacgattatgattgattga 15920274  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 4624512 - 4624548
Alignment:
Q  355 aaatatttttaatgatctcacgattatgattgattga 391  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  4624512 aaatatttttgatgatctgacgattatgattgattga 4624548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 49598485 - 49598417
Alignment:
Q  321 atatgtgactttaaaagtagttaggatgaaaactaaatatttttaatgatctcacgattatgattgatt 389  Q
    ||||||||||||||||||||||| |||  ||  |||| ||||||||| |||| |  |||||||||||||    
T  49598485 atatgtgactttaaaagtagttacgattgaagttaaagatttttaataatctgataattatgattgatt 49598417  T

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