View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16381_low_5 (Length: 483)
Name: NF16381_low_5
Description: NF16381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16381_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 7 - 471
Target Start/End: Complemental strand, 2895582 - 2895118
Alignment:
| Q |
7 |
ttatgatcataaaaccaatcaaacacaggaccatcctcctcttcatctaactcaaggtgaattgcttcgagcggttcaacttccaacagattatcagcat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2895582 |
ttatgatcataaaaccaatcaaacacaggaccatcctcctcttcatctaactcaaggtgaattgcttcgagcggttcaacttccaacagattatcagcat |
2895483 |
T |
|
| Q |
107 |
aatcaatcacaggctcctcatcatcaaacggtgggaacctcatcctcttaaaacatcgtcgatcacgcttctctctccgcatcataatccacattgtact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2895482 |
aatcaatcacaggctcctcatcatcaaacggtgggaacctcatcctcttaaaacatcgtcgatcacgcttctctctccgcatcataatccacattgtact |
2895383 |
T |
|
| Q |
207 |
ccattgagcgatgtaaattggttcaataacaagcggaatttcattcacaaatgtaatagcaccagaaacatgatacagaactttaacatctcgaacttgc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2895382 |
ccattgagcgatgtaaattggttcaataacaagcggaatttcattcacaaatgtaatagcaccagaaacatgatacagaactttaacatctcgaacttgc |
2895283 |
T |
|
| Q |
307 |
tcccatggcattggcatattttccagaagcttataaatagcatgcggtacgaatttcagtgctccgagataaactcgcttatcgtgacggaatttcgttg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2895282 |
tcccatggcattggcatattttccagaagcttataaatagcatgcggtacgaatttcagtgctccgagataaactcgcttatcgtgacggaatttcgttg |
2895183 |
T |
|
| Q |
407 |
atgacatatcaccgtgatcgcggatgatttttcgaacgtgttccggtggcatgagttctttctga |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2895182 |
atgacatatcaccgtgatcgcggatgatttttcgaacgtgttccggtggcatgagttctttctga |
2895118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 425
Target Start/End: Original strand, 44785837 - 44785970
Alignment:
| Q |
292 |
acatctcgaacttgctcccatggcattggcatattttccagaagcttataaatagcatgcggtacgaatttcagtgctccgagataaactcgcttatcgt |
391 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||||||||| |||||||||| |||||| |||| || ||||||||||| ||||| || ||||| |||| |
|
|
| T |
44785837 |
acatctcgaacctgctcccaaggcataggcatattttccaggagcttataaacagcatgtggtataaacttcagtgctccaagatacacacgcttgtcgt |
44785936 |
T |
|
| Q |
392 |
gacggaatttcgttgatgacatatcaccgtgatc |
425 |
Q |
| |
|
|||| |||||| | || |||||||| || ||||| |
|
|
| T |
44785937 |
gacgaaatttcttagaggacatatcgccatgatc |
44785970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 205
Target Start/End: Original strand, 44785507 - 44785618
Alignment:
| Q |
94 |
agattatcagcataatcaatcacaggctcctcatcatcaaacggtgggaacctcatcctcttaaaacatcgtcgatcacgcttctctctccgcatcataa |
193 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||| || || |||||||||||||||||| || ||||| | ||||| || | |||||| | |
|
|
| T |
44785507 |
agattatcagcatagtcaagtggaggctcctcatcatcaaatggaggaaacctcatcctcttaaaatgacgacgatcccttttctcccttctcatcatta |
44785606 |
T |
|
| Q |
194 |
tccacattgtac |
205 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44785607 |
tccacattgtac |
44785618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University