View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16381_low_6 (Length: 479)
Name: NF16381_low_6
Description: NF16381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16381_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 6 - 461
Target Start/End: Complemental strand, 42667300 - 42666845
Alignment:
| Q |
6 |
agcagcacagacataaaagcgttgaaaattttcagagcattctgaattctgaacctgctactactgtgccttcttattcttctccttttcctgatttgtt |
105 |
Q |
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| T |
42667300 |
agcagcatagacataaaagcgttgaaaattttcagagcattctgaattctgaacctgctactactgtgccttcttattcttctccttttcctgatttgtt |
42667201 |
T |
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| Q |
106 |
ctattctaagaaaaacaaacagaagaaacttaactctgtttcgccgtcacaacatcatgtttcagctatgattatgtcaaaaacaaaggatgaggatttt |
205 |
Q |
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| T |
42667200 |
ctattctaagaaaaacaaacagaagaaacttaactctgtttcgccgtcacaaaatcatgtttcagctatgattatgtcaaaaacaaaggatgaggatttt |
42667101 |
T |
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| Q |
206 |
tctgtgattactggtaatgagtcgccattgaactcaatacctccaccgcctcctcctccacctccgttcaagatgccagcatggaagttcaaggtgcagg |
305 |
Q |
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| T |
42667100 |
tctgtgattactggtaatgagtcgccattgaactcaatacctccaccgcctcctcctccacctccgttcaagatgccagcatggaagttcaaggtgcagg |
42667001 |
T |
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| Q |
306 |
gtgactttgttagaatagatagcattagtagttcaagttcggtagatatagatgaggaagtagtggagttaccaaccattagtggtgaagaaactggaat |
405 |
Q |
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| T |
42667000 |
gtgactttgttagaatagatagcattagtagttcaagttcggtagatatagatgaggaagtagtggagttaccaaccattagtggcgaagaacctggaat |
42666901 |
T |
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| Q |
406 |
tgatctattggtgtatccaaatcccaaccccggtgttgataacaaagctggtagtt |
461 |
Q |
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| T |
42666900 |
tgatctattggtgtatccaaatcccaaccccggtgttgataacaaagctggtagtt |
42666845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 42667432 - 42667380
Alignment:
| Q |
9 |
agcacagacataaaagcgttgaaaattttcagagcattctgaattctgaacct |
61 |
Q |
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| T |
42667432 |
agcatagacataaaagcgttgaaaattttcagaacattataaattctgaacct |
42667380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 42667354 - 42667311
Alignment:
| Q |
18 |
ataaaagcgttgaaaattttcagagcattctgaattctgaacct |
61 |
Q |
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| T |
42667354 |
ataaaagcgttgaaaattttcagaacattataaattctgaacct |
42667311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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