View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16381_low_9 (Length: 423)
Name: NF16381_low_9
Description: NF16381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16381_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 14 - 402
Target Start/End: Original strand, 50410584 - 50410972
Alignment:
| Q |
14 |
cagcacagaagataacataattgaatcctagaatgaacaacagcatgagaatgcaaacactgaccaatgccaaggaagaaaagatccagcaaagtaactg |
113 |
Q |
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| T |
50410584 |
cagcacagaagataacataattgaatcctagaatgaacaacagcatgagaatgcaaacactgaccaatgccaaggaagaaaagatccagcaaagtaactg |
50410683 |
T |
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| Q |
114 |
gaggttgatttatgattctgaaaactatcccctcttccttgagtgaaagatgaacaatctttagtcaacagtgttgacttattagccatcatattgttca |
213 |
Q |
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| T |
50410684 |
gaggttgatttatgattctgaaaactatcccctcttccttgagtgaaagatgaacaatctttagtcaacaatgttgacttattagccatcatattgttca |
50410783 |
T |
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| Q |
214 |
caaacatcgactcttgagtcttcataaactacagaataaattataatcataacaaacaaattaatcattaaacacatgcatcactgctgccacaatgtca |
313 |
Q |
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| T |
50410784 |
caaacatcgacccttgagtcttcataaactacagaataaattataatcataacaaacaaattaatcattaaacacatgcatcactgctgccacaatgtca |
50410883 |
T |
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| Q |
314 |
cttgtaatatcaattattgagacagaaatgctatttgaaaattacacatgagagggtcaattccagtaattaaaagcataaagttgaaa |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
50410884 |
cttgtaatatcaattattgagacagaaatgctatttgaaaattacacatgagaggatccattccagtaattaaaagcataaagttgaaa |
50410972 |
T |
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