View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16382_high_5 (Length: 364)
Name: NF16382_high_5
Description: NF16382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16382_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 363
Target Start/End: Original strand, 28129396 - 28129739
Alignment:
| Q |
20 |
ttttttaaataattattgttagtgtggtgtatagggtttgtatctatatcaatacttcgtagtacataacttggtgtcatgaaannnnnnnnnnnnnnnn |
119 |
Q |
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| T |
28129396 |
ttttttaaataattattgttagtgtggtgtctagggtttgtatctatatcaatacttcatagtacataacttggtgtcatgaaattttttatatcttttt |
28129495 |
T |
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| Q |
120 |
ngtaaccatgtaattggggcatacacaccagcttttgtcgatgattaatctctgtagtggattctctccactcaacatgttttcattcagagcgttcaaa |
219 |
Q |
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| T |
28129496 |
tgtaaccatgtaattggggcatacacaccagcttttgtcgatgattaaactctgtagtggattctctccactcaacatgttttcattcagagcgttcaaa |
28129595 |
T |
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| Q |
220 |
cccgagactttattttagagattaagagagagtgaagtgatgagtactaaccaatgcaaatccacctctagcgcaccaagtttttggcatggtggtagaa |
319 |
Q |
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| T |
28129596 |
cccgagactttattttagagattaagagagagtgaagtgatgagtactaaccaatgcaaatccacctctagcgcaccaagtttttggcatggtggtagaa |
28129695 |
T |
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| Q |
320 |
cgagcgccataccactctgggagactagttttccccagaataat |
363 |
Q |
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| T |
28129696 |
cgagcgccataccactctgggagactagttttccccagaataat |
28129739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 360
Target Start/End: Original strand, 28114076 - 28114201
Alignment:
| Q |
242 |
taagagagagtga-agtgatgagtacta---accaatgcaaatccacctctagcgcaccaagtttttg---gcatggtggtagaacgagcgccataccac |
334 |
Q |
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| T |
28114076 |
taagagagagtgatagtgatgagtactactaaccaagccaaatccacctctagggcaccaagcttgtcctagcatttttgaagaacgaatcccataccac |
28114175 |
T |
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| Q |
335 |
tctgggagactagttttccccagaat |
360 |
Q |
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| T |
28114176 |
tctggaagactagttttccccagaat |
28114201 |
T |
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