View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16382_high_6 (Length: 362)
Name: NF16382_high_6
Description: NF16382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16382_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 55208837 - 55209182
Alignment:
| Q |
1 |
tggaacaatttttgacgagactagagacagagaatcaatcatggcggagagctgcacatgaaaatgaagctatggtgttatcgctcaataacgccttaga |
100 |
Q |
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| T |
55208837 |
tggaacaatttttgacaagactagagacagagaatcaatcatggcggagagctgcacatgaaaatgaagctatggtgttatcgctcaataacgccttaga |
55208936 |
T |
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| Q |
101 |
atctatcaaagaaattagagcattggtagtagaagatgtagagtcatgttgtgatcaagaaactaccgggctgaacatgatttgcaaatgttgtcattca |
200 |
Q |
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| T |
55208937 |
atctatcaaagaaattagagcattggtagtagaagatgtagagtcatgttgtgatcaagaaactaccgggctgaacatgatttgcaaatgttgtcattca |
55209036 |
T |
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| Q |
201 |
aggatgtcgtcttttatgttccttccttgcaggcatctttgttcgtgtaaagcgtgtgagccttctctccaagcatgtcctgtgtgcctcatgccaaaga |
300 |
Q |
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| T |
55209037 |
aggatgtcgtcttttatgttccttccttgcaggcatctttgttcgtgtaaagcgtgtgaaccttctctccaagcatgtcctgtgtgcctcatgccaaaga |
55209136 |
T |
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| Q |
301 |
gatctactatagagactctctttctctaggatcatgtagttctagt |
346 |
Q |
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| T |
55209137 |
gatctactatagagactctctttctctaggatcatgtagttctagt |
55209182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 180 - 337
Target Start/End: Original strand, 13135505 - 13135662
Alignment:
| Q |
180 |
atttgcaaatgttgtcattca-aggatgtcgtcttttatgttccttccttgcaggcatctttgttcgtgtaaagcgtgtgagccttctctccaagcatgt |
278 |
Q |
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| T |
13135505 |
atttgcaaatgttgttattcacaaga-gtcatcttttatgttccttccttgcaggcacctatgttcatgtaaatcatgtgaaccttctctccaaacatgt |
13135603 |
T |
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| Q |
279 |
cctgtgtgcctcatgccaaagagatctactatagagactctctttctctaggatcatgt |
337 |
Q |
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| T |
13135604 |
cctgtgtgcttaatgccaaagagatctattatagagactctccctttctaggatcatgt |
13135662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 13135305 - 13135455
Alignment:
| Q |
1 |
tggaacaatttttgacgagactagagacagagaatcaatcatggcggagagctgcacatgaaaatgaagctatggtgttatcgctcaataacgccttaga |
100 |
Q |
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|||||||||| |||| |||||||| ||||| |||||| |||||||||||| | | |||||||||||||||||||| || ||||||||||||||||| |
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| T |
13135305 |
tggaacaattcttgatcagactagaaacagataatcaaatgtggcggagagcttctcgggaaaatgaagctatggtgttgtccctcaataacgccttaga |
13135404 |
T |
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| Q |
101 |
atctatcaaagaaattagagcattggtagtagaagatgtagagtcatgttgtga |
154 |
Q |
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| T |
13135405 |
acaaatcaaagaa---agaacattggctatagaagaagtagagtcatgttgtga |
13135455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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