View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16382_low_11 (Length: 303)
Name: NF16382_low_11
Description: NF16382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16382_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 8323680 - 8323957
Alignment:
| Q |
16 |
ttttcttcctagaatgagtggtagtggcttcaactccttgtgttcaaaccgtaccaatggcgtgtgtgagaatttgagtattgttctatctaaaaagggt |
115 |
Q |
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| T |
8323680 |
ttttcttcctagaatgagtggtagtggcttcaactccttgtgttcaaaccgtaccaatggcgtgtgtgagaatttgagtattgttctatctaaaaagggt |
8323779 |
T |
|
| Q |
116 |
aactcatttacctcaagggtttctcctcttgctattttggcccatgagttgatgagtctaatggctccaagtccatctgataaagggtgagaataagcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8323780 |
aactcatttacctcaagggtttctcctcttgctattttggcccatgagttgatgagtctaatggctccaagtccatctgataaagggtgagaataagcaa |
8323879 |
T |
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| Q |
216 |
taccaattgcaagaccttcatgtttgttttgaaatcttgtgagttgaaccacaaacaatggaatatcttccacaggtt |
293 |
Q |
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| T |
8323880 |
taccaattgcaagaccttcatctttgttttgaaatcttgtgagttgaaccacaaacaatggaatatcttccactggtt |
8323957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 18317537 - 18317748
Alignment:
| Q |
19 |
tcttcctagaatgagtggtagtggcttcaactccttgtgttcaaaccgtac--caat-ggcgtgtgtgagaatttgagtattgttctatctaaaaagggt |
115 |
Q |
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| T |
18317537 |
tcttcctagaatgagtggtagtggcttcaactctacgtgttcgaaacgtggttcaataggggtgtttgagaatttcagtattgttctatctaaataaggt |
18317636 |
T |
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| Q |
116 |
aactcatttacctcaagggtttctcctcttgctattttggcccatgagttgatgagtctaatggctccaagtccatctgataaagggtgagaataagcaa |
215 |
Q |
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| T |
18317637 |
aattcattagcctctagtctttcacctcttgctattttagcccatgagttgataaaattactacaaccaacaccatctgataaagggtgagagtaagcaa |
18317736 |
T |
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| Q |
216 |
taccaattgcaa |
227 |
Q |
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| T |
18317737 |
ttccaatagcaa |
18317748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 285
Target Start/End: Complemental strand, 18273014 - 18272863
Alignment:
| Q |
134 |
gtttctcctcttgctattttggcccatgagttgatga-gtctaatggctccaagtccatctgataaagggtgagaataagcaataccaattgcaagacct |
232 |
Q |
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| T |
18273014 |
gtttcacctcttgcaattttggcccatgagttgataaagtc-aatacaaccaacaccatctgataaaagatgagaataagcaattccaattgcaaagctt |
18272916 |
T |
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| Q |
233 |
tcatgtttgttttgaaatcttgtgagttgaaccacaaacaatggaatatcttc |
285 |
Q |
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| T |
18272915 |
tcatcattgtttcgaaatcttgtgagttgaacaacaaacaatggcatttcttc |
18272863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 18315336 - 18315252
Alignment:
| Q |
19 |
tcttcctagaatgagtggtagtggcttcaactccttgtgttcaaacc---gtaccaatggcgtgtgtgagaatttgagtattgtt |
100 |
Q |
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|||||||| ||||| ||||||||||||||||||| |||||||||| | || | | ||| |||||||||||||||||||||||| |
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| T |
18315336 |
tcttcctataatgaatggtagtggcttcaactccatgtgttcaaaacgtggttcaattggggtgtgtgagaatttgagtattgtt |
18315252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 19995890 - 19996169
Alignment:
| Q |
18 |
ttcttcctagaatgagtggtagtggcttcaactccttgtgttcaaaccgta---ccaatggcg-tgtgtgagaatttgagtattgttctatctaaaaagg |
113 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||| || |||| | |||||||||||||||| |||||| | || ||||| | |
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| T |
19995890 |
ttcttcctagaatgagtggtagtggcttcaactccatgtgttcaaaacgtggttccgatgggggtgtgtgagaatttgagcattgttatgtccaaaaatg |
19995989 |
T |
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| Q |
114 |
gtaactcatttacctcaagggtttctcctcttgctattttggcccatgagttgatgagtctaatggctccaagtccatctgataaagggtgagaataagc |
213 |
Q |
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|||||||||| ||||| | ||||| |||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| |||||| |||| |
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| T |
19995990 |
gtaactcattagcctcatgtgtttcacctcttgctattttggcccatgtgttgatgaatctaatggctcctagtccatctgataaagagtgagatcaagc |
19996089 |
T |
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| Q |
214 |
aataccaattgcaagaccttcatgtttgttttgaaatcttgtgagttgaaccacaaacaatggaatatcttccacaggtt |
293 |
Q |
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||||| |||||||||| ||||| ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19996090 |
aatactaattgcaagatgttcatctttgttttggaattttgtgagttgaaccagaaacaatggaatatcttccacaggtt |
19996169 |
T |
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