View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16382_low_13 (Length: 215)

Name: NF16382_low_13
Description: NF16382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16382_low_13
NF16382_low_13
[»] chr6 (7 HSPs)
chr6 (1-192)||(1898209-1898400)
chr6 (1-198)||(1913584-1913781)
chr6 (2-113)||(1892881-1892992)
chr6 (1-123)||(1903509-1903632)
chr6 (1-123)||(1907742-1907865)
chr6 (2-112)||(1888033-1888143)
chr6 (1-112)||(1880736-1880847)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 1898209 - 1898400
Alignment:
Q  1 aactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcacttatctccattgtttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1898209 aactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcacttatctccattgtttct 1898308  T
Q  101 tctgtaagatactcgcaaaactactgctacactgaccaaaaaatttgagttgtgttattttgacgcacaaatttgatatcaaaatttaacat 192  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1898309 tctgtaagatactcgcaaaactacttctacactgaccaaaaaatttgagttgtgttattttgaagcacaaatttgatatcaaaatttaacat 1898400  T

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Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 1913584 - 1913781
Alignment:
Q  1 aactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcacttatctccattgtttct 100  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  1913584 aactgccacaatcatatctacagttgtagctttgttatcagttccaaattcaagtgcttggataataggactaaatctctcacttatctccattgtttct 1913683  T
Q  101 tctgtaagatactc-gcaaaactactgctacactgaccaaaaaatttgagttgtgttattttgacgcacaaatttgatatcaaaatttaacatcaactt 198  Q
    |||||||||||| | |||||||||||||||||||     ||| ||||||||||||||| |||||| ||||| ||||||||||| ||| ||||| |||||    
T  1913684 tctgtaagatacactgcaaaactactgctacactttgacaaatatttgagttgtgtta-tttgactcacaagtttgatatcaatattcaacataaactt 1913781  T

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Target: chr6; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 1892881 - 1892992
Alignment:
Q  2 actgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcacttatctccattgtttctt 101  Q
    ||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  1892881 actgccaccatcatatcaacagttgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttctt 1892980  T
Q  102 ctgtaagatact 113  Q
    ||||||||||||    
T  1892981 ctgtaagatact 1892992  T

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Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 1903509 - 1903632
Alignment:
Q  1 aactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcacttatctccattgtttct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||  ||||| |||||| |    
T  1903509 aactgccaccatcatatctatagttgtagctttgttatcagttccaaaagcaagtgcttggaaaataggattgaatctctcactcgtctccgttgtttgt 1903608  T
Q  101 tctgtaagatactc-gcaaaacta 123  Q
    ||||||||||| || |||||||||    
T  1903609 tctgtaagatagtcagcaaaacta 1903632  T

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Target: chr6; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 1907742 - 1907865
Alignment:
Q  1 aactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcacttatctccattgtttct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||  ||||| |||||| |    
T  1907742 aactgccaccatcatatctatagttgtagctttgttatcagttccaaaagcaagtgcttggaaaataggattgaatctctcactcgtctccgttgtttgt 1907841  T
Q  101 tctgtaagatactc-gcaaaacta 123  Q
    ||||||||||| || |||||||||    
T  1907842 tctgtaagatagtcagcaaaacta 1907865  T

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Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 1888033 - 1888143
Alignment:
Q  2 actgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcacttatctccattgtttctt 101  Q
    |||||||||||| |||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  1888033 actgccaccatcttatcaacagttgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttctt 1888132  T
Q  102 ctgtaagatac 112  Q
    | |||||||||    
T  1888133 ccgtaagatac 1888143  T

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Target: chr6; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 1880736 - 1880847
Alignment:
Q  1 aactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcacttatctccattgtttct 100  Q
    |||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||    
T  1880736 aactgctaccatcatatcaacagttgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctctatagtttct 1880835  T
Q  101 tctgtaagatac 112  Q
    ||||||||||||    
T  1880836 tctgtaagatac 1880847  T

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