View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16382_low_2 (Length: 512)
Name: NF16382_low_2
Description: NF16382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16382_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 9 - 497
Target Start/End: Complemental strand, 28129366 - 28128876
Alignment:
| Q |
9 |
gagtcggacactgatagatgtcgaacaatggacacactcacacactatctatctgaagtgtccatgatatactacatatat--gtatagtaaagaagaag |
106 |
Q |
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| T |
28129366 |
gagtcggacactgatagatgtccaacaatggacacactcacacaatatctatctgaagtgtccatgatatactacatatatatgtatagtaaagaagaag |
28129267 |
T |
|
| Q |
107 |
tagaagaacttaagtctctcnnnnnnnnnggtagaagaacttaatgaagttgtatataaaaatcggcttaaaaatagaatgtaatttcagagtgacacaa |
206 |
Q |
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| T |
28129266 |
tagaagaacttaagtctctcaaaaaaaaaggtagaagaacttaatgaagttgtatataaaaatcggcttaaaaatagaatgtaatttcagagtgacacaa |
28129167 |
T |
|
| Q |
207 |
atgacatttgtgatatgctaactttgatattggttgatttttaatttaagtatagtattactgattagtaacatgttattgcagaatccttatgtggagt |
306 |
Q |
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| T |
28129166 |
atgacatttgtgatatgctaactttgatattggttgatttttaatttaagtatagtattactgattagtaacatgttattgcagaatccttatgtggagt |
28129067 |
T |
|
| Q |
307 |
ctaagagtccatgtgggtctagctttagatctgcaatttcagtggcaacaaacatggttacagtttcattagggacagaaactgatggctccatcatctg |
406 |
Q |
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| T |
28129066 |
ctaagagtccatgtgggtctagctttggatctgcaatttcagtggcaacaaacatggttacagtttcattagggacagaaactgatggctccattatctg |
28128967 |
T |
|
| Q |
407 |
tccagctgatcacaattcagtagtgggaatcaagccaactgttggactcactagcagggctggtgtcataccaatttcacctcgtcaagat |
497 |
Q |
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| T |
28128966 |
tccagctgatcacaattcagtagtgggaatcaagccaactgttggactcagtagcagggctggtgtcataccaatttcacctcgtcaagat |
28128876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 286 - 497
Target Start/End: Complemental strand, 28110580 - 28110369
Alignment:
| Q |
286 |
tgcagaatccttatgtggagtctaagagtccatgtgggtctagctttagatctgcaatttcagtggcaacaaacatggttacagtttcattagggacaga |
385 |
Q |
| |
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||||||| ||||||||||| || | |||||||| |||||||||| ||| || |||||||||||||| ||||||||| ||||||| || |||||||| |
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| T |
28110580 |
tgcagaacccttatgtggaatccgaaagtccatgcacgtctagctttggataagccatttcagtggcaactaacatggttgcagtttctttggggacaga |
28110481 |
T |
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| Q |
386 |
aactgatggctccatcatctgtccagctgatcacaattcagtagtgggaatcaagccaactgttggactcactagcagggctggtgtcataccaatttca |
485 |
Q |
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|||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
28110480 |
aactcatggctccattatctgtccagctgatcacaactcagtagtggggatcaagccaactgttggactcactagcagggctggcgtcataccgatttca |
28110381 |
T |
|
| Q |
486 |
cctcgtcaagat |
497 |
Q |
| |
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|||||||||||| |
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| T |
28110380 |
cctcgtcaagat |
28110369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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