View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16382_low_3 (Length: 461)
Name: NF16382_low_3
Description: NF16382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16382_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 448
Target Start/End: Original strand, 4325641 - 4326075
Alignment:
| Q |
13 |
aatatcattgaaaagtttgtcaataattttgctgaacattatctttgatagaatcttttaaaccttgnnnnnnncctttcggtgatagttgacatgttat |
112 |
Q |
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| T |
4325641 |
aatatcattgaaaagtttgtcaataattttgctgaacattatctttgatagaattttttaaaccttgtttttt-cctttcggtgatagttgacatgttat |
4325739 |
T |
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| Q |
113 |
gctatcctatgatatcaaacaaacaaagtactaacaagcctaaattattactgcctataattgaaagatataatctatacacaataaaatcctttatatg |
212 |
Q |
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| T |
4325740 |
gctatcctatgatatcaaacaaacaaagtactaacaagcctaaattattactgcctataattgaaagatataatctatacacaataaaatcctttatatg |
4325839 |
T |
|
| Q |
213 |
taaacaagtaaacaacattactctaacagagaatgtaatcttaactagtaactacttaactgtagcagtgtgagtgtcccctttattttattttcccgct |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4325840 |
taaacaagtaaacaacattactctaacagagaatgtaatcttaactagtaactacttaaatgtagcagtgtgagtgtcccctttattttattttcccgct |
4325939 |
T |
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| Q |
313 |
tccataagcatacatgtgttcattttttctctctaaattgggcctttggttcaacactatgatcatgacttccgttggttctgcgcgccaatgcctctag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4325940 |
tccataagcatacatgtgttcattttttctctctaaattgggcctttggttcaacactatgatcatgacttccgttggttctgcgcgccaatgcctctgg |
4326039 |
T |
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| Q |
413 |
tcattttttcccttattgtttcaatttgttgttaga |
448 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
4326040 |
tcattttttcccttattgtttcaatttgttgttaga |
4326075 |
T |
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