View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16382_low_9 (Length: 326)

Name: NF16382_low_9
Description: NF16382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16382_low_9
NF16382_low_9
[»] chr6 (2 HSPs)
chr6 (1-319)||(21015341-21015659)
chr6 (174-245)||(21980012-21980083)
[»] chr4 (17 HSPs)
chr4 (38-319)||(49044461-49044742)
chr4 (28-319)||(49048833-49049110)
chr4 (190-300)||(7813064-7813174)
chr4 (180-289)||(7822564-7822673)
chr4 (176-254)||(7904662-7904740)
chr4 (203-300)||(7800221-7800318)
chr4 (204-267)||(48156825-48156888)
chr4 (201-270)||(48170984-48171053)
chr4 (161-300)||(48862825-48862967)
chr4 (202-268)||(45366617-45366683)
chr4 (204-270)||(48735713-48735779)
chr4 (177-273)||(7765232-7765328)
chr4 (168-268)||(45372419-45372519)
chr4 (203-270)||(7907939-7908006)
chr4 (176-270)||(7771018-7771112)
chr4 (176-242)||(7774199-7774265)
chr4 (204-278)||(48891015-48891089)
[»] chr3 (4 HSPs)
chr3 (41-273)||(11015757-11015992)
chr3 (48-305)||(11006201-11006461)
chr3 (46-152)||(11024774-11024880)
chr3 (203-273)||(11024934-11025004)
[»] chr5 (4 HSPs)
chr5 (200-266)||(29712863-29712929)
chr5 (93-254)||(29687681-29687842)
chr5 (176-268)||(29695768-29695860)
chr5 (204-278)||(1812031-1812105)
[»] chr8 (3 HSPs)
chr8 (161-269)||(15348477-15348585)
chr8 (203-270)||(12199921-12199988)
chr8 (203-270)||(12444349-12444416)
[»] chr1 (2 HSPs)
chr1 (167-265)||(24309796-24309894)
chr1 (165-268)||(24340030-24340133)
[»] scaffold0508 (1 HSPs)
scaffold0508 (167-268)||(11878-11979)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 21015659 - 21015341
Alignment:
Q  1 taaaattacaatataggggaggacaatgaggatcagaacgtggacgcataaaattaaggttaagtgaagtagaagtataataatcgctaagtgatgtttc 100  Q
    |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  21015659 taaaattacaatataggggacgacgacgaggatcagaacgtggacgcataaaattaaggttcagcgaagtagaagtataataatcgctaagtgatgtttc 21015560  T
Q  101 aaaatcgatcaatcgagtttcaaggtctggatttgacatgaacaaaattctaggattgcgtgcggcagtaatttcaaaatgtgaaattacaaagtgggtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  21015559 aaaatcgatcaatcgagtttcaaggtctggatttgacatgaacaaaattctaggattgtgtgcggcagtaatttcaaaatgtgaaattgcaaagtgggtt 21015460  T
Q  201 tgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaacaaaattaagatgatcaagtcttgaggca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  21015459 tgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaacaaaattaggatgatcaattcttgaggca 21015360  T
Q  301 catactgtggattcatctc 319  Q
     ||||||||||||| ||||    
T  21015359 gatactgtggattcttctc 21015341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 21980012 - 21980083
Alignment:
Q  174 tcaaaatgtgaaattacaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgt 245  Q
    |||||||||||| |  |||||| ||  |||||||| ||||||||| |  |||||||||||||||||||||||    
T  21980012 tcaaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgt 21980083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 38 - 319
Target Start/End: Original strand, 49044461 - 49044742
Alignment:
Q  38 acgtggacgcataaaattaaggttaagtgaagtagaagtataataatcgctaagtgatgtttcaaaatcgatcaatcgagtttcaaggtctggatttgac 137  Q
    ||||||||||| |||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||     
T  49044461 acgtggacgcacaaaactaaggttcagtgaagtagatgtataataatcgctaagtgatgcttcaaaatcgatcaatcgagtttcaagatatggatttgat 49044560  T
Q  138 atgaacaaaattctaggattgcgtgcggcagtaatttcaaaatgtgaaattacaaagtgggtttgagagataagagaaaacaataacttacaaacacact 237  Q
    |||||||||||| ||||| || |||   | |||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  49044561 atgaacaaaattttaggactgtgtgtcacggtaatttcaaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacact 49044660  T
Q  238 tgaaacgtagaagagacatgaccggtaacctcaacaaaattaagatgatcaagtcttgaggcacatactgtggattcatctc 319  Q
    ||||||||| ||||||||| || || ||||||| || ||| | |||||||||||| ||||||| |||| |||||||| ||||    
T  49044661 tgaaacgtaaaagagacatcactggcaacctcagcagaataaggatgatcaagtcatgaggcagatacggtggattcttctc 49044742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 28 - 319
Target Start/End: Original strand, 49048833 - 49049110
Alignment:
Q  28 gaggatcagaacgtggacgcataaaattaaggttaagtgaagtagaagtataataatcgcta--agtgatgtttcaaaatcgatcaatcgagtttcaagg 125  Q
    ||||||||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||||  || |||| ||||||||||||||||||||||| |||     
T  49048833 gaggatcaggacgtggacgcacaaatttaaggttcagtgaagtagaagtataataatcgctaagagagatgcttcaaaatcgatcaatcgagtttgaaga 49048932  T
Q  126 tctggatttgacatgaacaaaattctaggattgcgtgcggcagtaatttcaaaatgtgaaattacaaagtgggtttgagagataagagaaaacaataact 225  Q
    ||||||||||| |||||||||||||||||| ||  ||||||  ||||              || |||| |||||||||||||||||||||||| ||||||    
T  49048933 tctggatttgatatgaacaaaattctaggactgtttgcggcgataat--------------ttgcaaaatgggtttgagagataagagaaaaccataact 49049018  T
Q  226 tacaaacacacttgaaacgtagaagagacatgaccggtaacctcaacaaaattaagatgatcaagtcttgaggcacatactgtggattcatctc 319  Q
    ||||||||||||||||||||| ||||||||| ||| | |||||   || ||||| ||| |||||||| ||||||| |||  |||||||| ||||    
T  49049019 tacaaacacacttgaaacgtaaaagagacatcaccagcaacct--gcagaattaggataatcaagtcatgaggcagataaagtggattcttctc 49049110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 190 - 300
Target Start/End: Complemental strand, 7813174 - 7813064
Alignment:
Q  190 caaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaacaaaattaagatgatcaa 289  Q
    ||||||||| || |||||||||||||||| || | |||||||||||||||||||||| |||| || | ||||| ||||||||||| |||| ||| |||||    
T  7813174 caaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaa 7813075  T
Q  290 gtcttgaggca 300  Q
     || |||||||    
T  7813074 atcatgaggca 7813064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 7822673 - 7822564
Alignment:
Q  180 tgtgaaattacaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaacaaaatta 279  Q
    |||||| || |||||||||  | |||||||||||||||| || | |||||||||||||||||||||| |||| || | ||||| ||||||||||| ||||    
T  7822673 tgtgaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagatta 7822574  T
Q  280 agatgatcaa 289  Q
     ||| |||||    
T  7822573 ggattatcaa 7822564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 254
Target Start/End: Complemental strand, 7904740 - 7904662
Alignment:
Q  176 aaaatgtgaaattacaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagac 254  Q
    |||||||||| || ||||||| |  | |||||||||||||||| |||||||||||||||| |||||||||| |||||||    
T  7904740 aaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagac 7904662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 7800318 - 7800221
Alignment:
Q  203 agagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaacaaaattaagatgatcaagtcttgaggca 300  Q
    ||||| |||||||||| || | |||||||||||||||||||||| |||| || | ||||| ||||||||||| |||| ||| ||||| || |||||||    
T  7800318 agagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgaggca 7800221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 48156825 - 48156888
Alignment:
Q  204 gagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacc 267  Q
    ||||||||||||||| |  |||||||||| ||||||||||||||||||||| | ||||||||||    
T  48156825 gagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaacc 48156888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 48170984 - 48171053
Alignment:
Q  201 tgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctca 270  Q
    ||||||||||||| |||| |  ||||||||||||| |||||||||||||||||| | |||| ||||||||    
T  48170984 tgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccgataacctca 48171053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 300
Target Start/End: Complemental strand, 48862967 - 48862825
Alignment:
Q  161 tgcggcagtaatttcaaaatgtgaaattacaaagtg-ggtt--tgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatg 257  Q
    ||||||||||| || |||||||||| || ||||||| || |  |||||||||||||||||| |  |||| ||||| || |||||||| | ||||||| |     
T  48862967 tgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttc 48862868  T
Q  258 accggtaacctcaacaaaattaagatgatcaagtcttgaggca 300  Q
    ||||||||||| | ||  |||| ||||||||| || |||||||    
T  48862867 accggtaaccttagcaggattaggatgatcaattcatgaggca 48862825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 45366617 - 45366683
Alignment:
Q  202 gagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacct 268  Q
    ||||||||||||||||| |  |||||||||| ||||||||||||| ||||||| | || ||||||||    
T  45366617 gagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaacct 45366683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 48735713 - 48735779
Alignment:
Q  204 gagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctca 270  Q
    ||||||||||||||| |  ||||||||||||| |||||||| | ||||||| | |||||||||||||    
T  48735713 gagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacctca 48735779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 7765328 - 7765232
Alignment:
Q  177 aaatgtgaaattacaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaaca 273  Q
    ||||||||| || ||||||| |  | |||||||| ||||||| ||||||||||||  |||||||||  ||  |||||| | ||||||||||||||||    
T  7765328 aaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaaca 7765232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 268
Target Start/End: Original strand, 45372419 - 45372519
Alignment:
Q  168 gtaatttcaaaatgtgaaattacaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacc 267  Q
    ||||||| |||||||||| || |||| || |  | |||||||| ||||||| |  ||||||||||||| |||||||||| ||||||| | ||||| ||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  268 t 268  Q
    |    
T  45372519 t 45372519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 7908006 - 7907939
Alignment:
Q  203 agagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctca 270  Q
    |||||||||||||||| || |||||| |||| |||||||||||  ||||||| | ||||| |||||||    
T  7908006 agagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctca 7907939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 270
Target Start/End: Complemental strand, 7771112 - 7771018
Alignment:
Q  176 aaaatgtgaaattacaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctca 270  Q
    |||||||||| || ||||||| |  | |||||||||||||||| |  |||||||||| || ||||||| || ||||||| | ||||| |||||||    
T  7771112 aaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctca 7771018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 7774199 - 7774265
Alignment:
Q  176 aaaatgtgaaattacaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaa 242  Q
    |||||||||| || |||| ||||  | |||||||||||||||| ||| |||||||||||| ||||||    
T  7774199 aaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaa 7774265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 48891089 - 48891015
Alignment:
Q  204 gagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaacaaaatt 278  Q
    |||| |||||||||| |  |||||||||| || |||||||||| ||||||| | |||| ||||||||||| ||||    
T  48891089 gagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataacctcaacataatt 48891015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 273
Target Start/End: Original strand, 11015757 - 11015992
Alignment:
Q  41 tggacgcataaaattaaggttaagtgaagtagaagtataataatcgctaagtgatgtttcaaaatcgatcaatcgagtttcaaggtctggatttgacatg 140  Q
    |||| |||||||||||||||| ||||||||||||| | ||| |||| |||| || | ||||||||| ||  |||||||||||||  || || ||||||||    
T  11015757 tggaggcataaaattaaggttcagtgaagtagaagcagaatcatcgttaagcgacgcttcaaaatcaatggatcgagtttcaagagctagagttgacatg 11015856  T
Q  141 aacaaaattctaggattgcgtgcggcagt---aatttcaaaatgtgaaattacaaagtgggtttgagagataagagaaaacaataacttacaaacacact 237  Q
    |||| |||||||  | || |||  |||||   || ||||||||| ||  || ||||||     | |||||||||||  |||||| |||||||||| || |    
T  11015857 aacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaacaatgacttacaaacgcatt 11015956  T
Q  238 tgaaacgtagaagagacatgaccggtaacctcaaca 273  Q
    |||||||||  |||||| | ||||||||||||||||    
T  11015957 tgaaacgtatgagagacttcaccggtaacctcaaca 11015992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 48 - 305
Target Start/End: Original strand, 11006201 - 11006461
Alignment:
Q  48 ataaaattaaggttaagtgaagtagaagtataataatcgctaagtgatgtttcaaaatcgatcaatcgagtttcaaggtctggatttgacatgaacaaaa 147  Q
    |||||||||| ||| ||||||||||||| | ||| |||| |||| |||| ||||||||| ||  ||||| |||||||  ||||| |||||||||||| ||    
T  11006201 ataaaattaaagttcagtgaagtagaagcagaatcatcgttaagcgatgcttcaaaatctatggatcgaatttcaagagctggagttgacatgaacacaa 11006300  T
Q  148 ttctaggattgcgtgcggcagt---aatttcaaaatgtgaaattacaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacg 244  Q
    |||||  | || |||    |||   ||  |||||||| ||  || ||||||| |  | |||||||||||  ||| || ||||||||||||||||||||||    
T  11006301 ttctattagtgtgtgttctagtggaaaggtcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacg 11006400  T
Q  245 tagaagagacatgaccggtaacctcaacaaaattaagatgatcaagtcttgaggcacatac 305  Q
    || ||| ||| | ||||| ||||||||||| |||   |||||||| || ||||||| ||||    
T  11006401 tataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagatac 11006461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 11024774 - 11024880
Alignment:
Q  46 gcataaaattaaggttaagtgaagtagaagtataataatcgctaagtgatgtttcaaaatcgatcaatcgagtttcaaggtctggatttgacatgaacaa 145  Q
    |||||||||||||||||||||||||||||| | ||| |||| |||| |||| ||||||||| ||  |||||||||| ||  || || ||||||||||||     
T  11024774 gcataaaattaaggttaagtgaagtagaagcagaatcatcgttaagcgatgcttcaaaatctatggatcgagtttccagagctagagttgacatgaacac 11024873  T
Q  146 aattcta 152  Q
    |||||||    
T  11024874 aattcta 11024880  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 11024934 - 11025004
Alignment:
Q  203 agagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaaca 273  Q
    |||||||||||  ||| || |||||||||| || ||||||||||  |||||| | ||||||||||||||||    
T  11024934 agagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaaca 11025004  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 29712863 - 29712929
Alignment:
Q  200 ttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaac 266  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||| | ||||||| | |||||||||    
T  29712863 ttgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 29712929  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 254
Target Start/End: Complemental strand, 29687842 - 29687681
Alignment:
Q  93 gatgtttcaaaatcgatcaatcgagtttcaaggtctggatttgacatgaacaaaattctaggattgcgtgc---ggcagtaatttcaaaatgtgaaatta 189  Q
    |||||||||||||| ||  || ||| |||||| |||||||||   ||||||| |||||||||| || ||||   ||| |||| || |||||| ||| ||     
T  29687842 gatgtttcaaaatctatagatagagattcaagatctggattt---atgaacagaattctaggagtgtgtgcattggcggtaagttgaaaatgagaatttg 29687746  T
Q  190 caaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagac 254  Q
    ||||||| | |||||| || ||||||||| |  ||||||||||||||||||| |||| |||||||    
T  29687745 caaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagac 29687681  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 29695860 - 29695768
Alignment:
Q  176 aaaatgtgaaattacaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacct 268  Q
    |||||||||| || ||||||| | |||||| |||||||| ||| ||||||||||||| || |||||||| | ||||||| |||| ||||||||    
T  29695860 aaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagagacttgactggtaacct 29695768  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 1812105 - 1812031
Alignment:
Q  204 gagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaacaaaatt 278  Q
    ||||||||||||||| ||||||||||||| || ||| ||||||  ||| || | || ||||||||||||||||||    
T  1812105 gagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacctcaacaaaatt 1812031  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 269
Target Start/End: Complemental strand, 15348585 - 15348477
Alignment:
Q  161 tgcggcagtaatttcaaaatgtgaaattacaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgacc 260  Q
    |||||| ||||||| |||||||||| || | ||||  |  | |||||||||||||||| |  |||||||||| || |||||||||| ||||||| | |||    
T  15348585 tgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcacc 15348486  T
Q  261 ggtaacctc 269  Q
    |||||||||    
T  15348485 ggtaacctc 15348477  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 12199988 - 12199921
Alignment:
Q  203 agagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctca 270  Q
    |||||||||||||||| || ||||||||||||| ||||||| || ||||||| | ||||| |||||||    
T  12199988 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctca 12199921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 12444416 - 12444349
Alignment:
Q  203 agagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctca 270  Q
    |||||||||||||||| || ||||||||||||| ||||||| || ||||||| | ||||| |||||||    
T  12444416 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctca 12444349  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 24309894 - 24309796
Alignment:
Q  167 agtaatttcaaaatgtgaaattacaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaa 265  Q
    ||||| || |||||||||| || ||||||| |  | |||||||||||||||| |||||||||||||  | |||||||| | ||||||| | ||||||||    
T  24309894 agtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 24309796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 268
Target Start/End: Complemental strand, 24340133 - 24340030
Alignment:
Q  165 gcagtaatttcaaaatgtgaaattacaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggta 264  Q
    ||||||| || ||| |||||| || |||||||  | | ||||||||| |||||| || ||||||||||| | |||||||| | ||||||| | |||||||    
T  24340133 gcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagacttaaccggta 24340034  T
Q  265 acct 268  Q
    ||||    
T  24340033 acct 24340030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 268
Target Start/End: Complemental strand, 11979 - 11878
Alignment:
Q  167 agtaatttcaaaatgtgaaattacaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaac 266  Q
    ||||| || |||||||||| || |||||||  | | |||||||||||||||| || ||||||||||  | |||||||| | ||||||| | | |||||||    
T  11979 agtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaatcggtaac 11880  T
Q  267 ct 268  Q
    ||    
T  11879 ct 11878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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