View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16383_high_8 (Length: 277)
Name: NF16383_high_8
Description: NF16383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16383_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 9097150 - 9097401
Alignment:
| Q |
17 |
agaaatgcctccagagcccaccatgtatccagatgaaacaatttcaagaggtgaaacaaccaacttagaccaaacaacatccagtgacttcattagttct |
116 |
Q |
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| T |
9097150 |
agaaatgcctccagagcccaccatgtatccagatgaaacaatttcaagaggtgaaacaaccaacttagaccaaacaacatccagtgacttcattagttct |
9097249 |
T |
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| Q |
117 |
agcgattcgggggaaaacatgagtaatcctctattagagaatacttcttgacttcttgacacttgttagaatccatcatatcaaaaatacttgttctttt |
216 |
Q |
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| T |
9097250 |
agcgatttggaggaaaacatgagtaatcctctattagagaatacttcttgagttcttgacacttgttagaatccatcatatc---aatacttgttctttt |
9097346 |
T |
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| Q |
217 |
gtaattctactattccattctgttcagtgtccctaaaaatatcataagaataatc |
271 |
Q |
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| T |
9097347 |
gtaattctactcttccattctgttcagtgtccctaaatatagcataagattaatc |
9097401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 9105331 - 9105584
Alignment:
| Q |
17 |
agaaatgcctccagagcccaccatgtatccagatgaaacaatttcaagaggtgaaacaaccaacttagaccaaacaacatccagtgacttcattagttct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| |||| |||||||||||| |
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| T |
9105331 |
agaaatgcctccagagcccaccatgtatccagatgaaacaatttcaagagatgaaacaaccagcttcgaccaaacaacatcaggtgatttcattagttct |
9105430 |
T |
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| Q |
117 |
agcgattcgggggaaaacatgagtaatcctctattagagaatacttcttgacttcttgacacttgttagaatccatcatatcaaaaatacttgttctttt |
216 |
Q |
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| T |
9105431 |
agcgattcaggggaaaacatgagtaatcctctattagagaatacttcttgacttcttgacacttgttagaatccatcatatctaaaacacttgttttttt |
9105530 |
T |
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| Q |
217 |
gtaattctactattccattctgttcagtgtccctaaaaatatcataagaataat |
270 |
Q |
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| T |
9105531 |
gtaattctactcttccattctgtttagtgtccctaacaatatcataagcataat |
9105584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 9056330 - 9056183
Alignment:
| Q |
18 |
gaaatgcctccagagcccaccatgtatccagatgaaacaatttcaagaggtgaaacaaccaacttagaccaaacaacatccagtgacttcattagttcta |
117 |
Q |
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||||||||| | ||||| || ||||||||||||||| |||||| | |||||||||||||| ||||||| | ||| ||||||||||||||||||| |
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| T |
9056330 |
gaaatgccttcggagccaactttgtatccagatgaaatgatttcatcggatgaaacaaccaactccgaccaaagagtatcaagtgacttcattagttcta |
9056231 |
T |
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| Q |
118 |
gcgattcgggggaaaacatgagtaatcctctattagagaatacttctt |
165 |
Q |
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| T |
9056230 |
gtgatattggggaaaacataactagtccttcactagagaatatttctt |
9056183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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