View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16383_low_10 (Length: 281)
Name: NF16383_low_10
Description: NF16383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16383_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 17377664 - 17377921
Alignment:
| Q |
20 |
cattgaccatagtcttcacccaaatttatcctcctgtccaaggatctctcccacatgtaagctgatttagtagttcctagatgtatgtctggtgttttcg |
119 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17377664 |
cattcaccatagtcttcacgcaaatttatcctcctgtccaaggatctctcccacatgtaagctgattcagtagttcctagatgtatgtctggtgttttcg |
17377763 |
T |
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| Q |
120 |
ttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgcattgttttgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17377764 |
ttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgcattgttttgt |
17377863 |
T |
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| Q |
220 |
tagctcaaattttcgcgatgagccaagcatcctttgtttgtattgagtataatctacc |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
17377864 |
tagctcaaattttcgcgatgagccaagcatcctttgtttgtattgagcataatttacc |
17377921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 41 - 244
Target Start/End: Original strand, 17392793 - 17392997
Alignment:
| Q |
41 |
aaatttatcctcctgtccaaggatctctcccacatgtaagctgattt--agtagttcctagatgtatgtctggtgttttcgttagtttcaatacttgctt |
138 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||| | || ||||||||||||||| |||||||||| ||||||||| ||| | || |
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| T |
17392793 |
aaatttatcctcctgtccaagaatgtctcccacatgtaagctgaatctcagcagttcctagatgtatacctggtgtttttgttagtttcgatattcacta |
17392892 |
T |
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| Q |
139 |
ctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgcattgttttgttagctcaaattttcgcgat |
238 |
Q |
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| T |
17392893 |
ctactgaatttgatggtttgaacaatataggcttattcaagtcaatggttttccaatactttcatctttgcattgttttgttaactc-aattttcgtgat |
17392991 |
T |
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| Q |
239 |
gagcca |
244 |
Q |
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|||||| |
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| T |
17392992 |
gagcca |
17392997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 17384082 - 17384124
Alignment:
| Q |
41 |
aaatttatcctcctgtccaaggatctctcccacatgtaagctg |
83 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
17384082 |
aaatttatcctcttgtccaaggatctctccctcatgtaagctg |
17384124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 17384143 - 17384248
Alignment:
| Q |
90 |
tagttcctagatgtatgtctggtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtct |
189 |
Q |
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||||||| |||||||| | ||| |||| |||| || ||||| || || |||||| ||||||||||| |||||||||||||||| |||||| | |||| |
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| T |
17384143 |
tagttcccagatgtataccgggtatttttgttacttacaatatttactactactggatttgatggttcgaacaatataggcttattcaaatcaatggtct |
17384242 |
T |
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| Q |
190 |
gccaat |
195 |
Q |
| |
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||||| |
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| T |
17384243 |
accaat |
17384248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 244
Target Start/End: Complemental strand, 26052689 - 26052557
Alignment:
| Q |
111 |
gtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgca |
210 |
Q |
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||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||| ||||| | ||| |||||||||||| ||| |||| |
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| T |
26052689 |
gtgtttttgttagtttcaatatttgctactactgaatttgatggtttgaacaatataggtttatactaatcaatggtccgccaatactttcatctgtgca |
26052590 |
T |
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| Q |
211 |
ttgttttgttagctcaaattttcgcgatgagcca |
244 |
Q |
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||||||||||| ||| |||||||| ||||||||| |
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| T |
26052589 |
ttgttttgttaactc-aattttcgtgatgagcca |
26052557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 15785027 - 15785065
Alignment:
| Q |
45 |
ttatcctcctgtccaaggatctctcccacatgtaagctg |
83 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |
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| T |
15785027 |
ttatcctcctgtccaaaaatctctcccacatgtaagctg |
15785065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 32226939 - 32226975
Alignment:
| Q |
43 |
atttatcctcctgtccaaggatctctcccacatgtaa |
79 |
Q |
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||||||||| |||||||||||||||||| |||||||| |
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| T |
32226939 |
atttatccttctgtccaaggatctctccgacatgtaa |
32226975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 32241613 - 32241577
Alignment:
| Q |
43 |
atttatcctcctgtccaaggatctctcccacatgtaa |
79 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
32241613 |
atttatcctcctgtccaaggatctctccggcatgtaa |
32241577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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