View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16383_low_12 (Length: 239)
Name: NF16383_low_12
Description: NF16383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16383_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 35 - 220
Target Start/End: Original strand, 34511520 - 34511702
Alignment:
| Q |
35 |
ttcaaaataacttcgtccaagagacatcaacgaccatggggcagaggtattccattctttctgaagtttttgatgaatttcagctgaagagcatggcggc |
134 |
Q |
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| T |
34511520 |
ttcaaaataacctcgtccaagagacgtcaacgaccatggggcggaggtattccattgtttctgaagtttttgatgaatttcagctgaagagcat---ggc |
34511616 |
T |
|
| Q |
135 |
ttatcccctttgtttaagaccaatctccctcggagattatgcttacagtaatcaatacctttttcatacatcgtctgagagatacg |
220 |
Q |
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| T |
34511617 |
ttatcccctttgtttaagaccaatctccctcggagattacgcttacagtagtcaatacctttttcatacaccgtctgagagatacg |
34511702 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 32940576 - 32940370
Alignment:
| Q |
1 |
ctgagcgcatatcagattcagaagcgnnnnnnnnttcaaaataacttcgtccaagagacatcaacgaccatggggcagaggtattccattctttctgaag |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||| ||||||| ||||||||| |
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| T |
32940576 |
ctgagcgcatatcagattcagaagcgaaaaaaaattcaaaataacctcgtccaagagacatcagcggccatggggcagaggtcttccattgtttctgaag |
32940477 |
T |
|
| Q |
101 |
tttttgatgaatttcagctgaagagcatggcggcttatcccctttgtttaagaccaatctccctcggagattatgcttacagtaatcaatacctttttca |
200 |
Q |
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||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| |
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| T |
32940476 |
tttttcatgaatttcagctgaggagcat---ggcttatcccctttgtttaagaccaatctccctcggagattacgcttacagcagtcaatacctttttca |
32940380 |
T |
|
| Q |
201 |
tacatcgtct |
210 |
Q |
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|||| ||||| |
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| T |
32940379 |
tacaccgtct |
32940370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 40789275 - 40789093
Alignment:
| Q |
35 |
ttcaaaataacttcgtccaagagacatcaacgaccatggggcagaggtattccattctttctgaagtttttgatgaatttcagctgaagagcatggcggc |
134 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
40789275 |
ttcaaaataacctcgtccaagagacatcaacgaccatggggcagaggtattccattgtttctgaagtttttgatgaatttcagccgaagagcat---ggc |
40789179 |
T |
|
| Q |
135 |
ttatcccctttgtttaagaccaatctccctcggagattatgcttacagtaatcaatacctttttcatacatcgtctgagagatacg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| | ||||||||||||| |
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| T |
40789178 |
ttatcccctttgtttaagaccaatctccctcggagattacgcttacaatagtcaatacctttttcatacaccatctgagagatacg |
40789093 |
T |
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