View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16383_low_2 (Length: 742)
Name: NF16383_low_2
Description: NF16383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16383_low_2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 672; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 35 - 742
Target Start/End: Original strand, 12682915 - 12683622
Alignment:
| Q |
35 |
gtaccgttgccagcagcagcagcaccattgccgataccgataccagcaatacctacaccgcagcaagttcaaaatccaactgtaacagtgcaacaacaaa |
134 |
Q |
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| T |
12682915 |
gtaccgttgccagcagcagcagcaccattgccaataccgataccagcaatacctacaccgcagcaagttcaaaatccaactgtaacagtgcaacaacaaa |
12683014 |
T |
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| Q |
135 |
catcagtcattcctcaggcttcaccattgccacaacatcagcagcagcaacagcaggttcaggtacaacagcagcaagtgacgaatatggaagttgcgaa |
234 |
Q |
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| T |
12683015 |
catcagtcattcctcaggcttcaccgttgccacaacatcagcagcagcaacagcaggttcaggtacaacagcagcaagtgatgaatatggaagttgcgaa |
12683114 |
T |
|
| Q |
235 |
aagtgataacaatggtgagagtatgatgcatgcaagttattctagggggccaaaaactgaggttgaggcattgataaagctaagaacaactcttgatatg |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12683115 |
aagtgataacaatggtgagagtatgatgcatgcaagttcttctaggtggccaaaaactgaggttgaggcattgataaagctgagaacaactcttgatatg |
12683214 |
T |
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| Q |
335 |
aagtaccaagagaatggacctaaagggccattatgggaggagatttcagggttgatgaagaaaatggggtacaataggaatgcaaagaggtgcaaagaga |
434 |
Q |
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| T |
12683215 |
aagtaccaagagaatggacctaaagggccattatgggaggagatttcagggttgatgaagaaaatggggtacaataggaatgcaaagaggtgcaaagaga |
12683314 |
T |
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| Q |
435 |
aatgggagaacattaacaagtatttcaagaaagtgaaggaaagcaacaagaagaggccagaagattcaaagacatgtccttactttcaccaacttgatgc |
534 |
Q |
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| T |
12683315 |
aatgggaaaacattaacaagtatttcaagaaagtgaaggaaagcaacaagaagaggccagaagattcaaagacatgtccttactttcaccaacttgatgc |
12683414 |
T |
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| Q |
535 |
tctatacaggcagaagaacaaggtggagggtgcagctgctgctgcgtcgaggcctgagggaacgatgatggcaccgttgatggttcagccggagcagcag |
634 |
Q |
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| T |
12683415 |
tctatacaggcagaagaacaaggtggagggtgcagctgctgctgcgtcgaggcctgagggaacgatgatggcaccgttgatggttcagccggagcagcag |
12683514 |
T |
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| Q |
635 |
tggcctccacagcaacaggtgccaccagcagccggggcggatgtgaccatggaggaagctgagactgagaatgatcagccgcgtcgagatgaagaagaat |
734 |
Q |
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| T |
12683515 |
tggcctccacagcaacaggtgccaccagcagccggggcggatgtgaccatggaggaagctgagactgagaatgatcggccgcatcgagatgaagaagaat |
12683614 |
T |
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| Q |
735 |
attatgac |
742 |
Q |
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|||||||| |
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| T |
12683615 |
attatgac |
12683622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 9e-35; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 335 - 522
Target Start/End: Complemental strand, 44553498 - 44553311
Alignment:
| Q |
335 |
aagtaccaagagaatggacctaaagggccattatgggaggagatttcagggttgatgaagaaaatggggtacaataggaatgcaaagaggtgcaaagaga |
434 |
Q |
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|||||||||||||||||||| ||||| || ||||||||||||| || |||||||| | || ||||||||||||||||| ||||||||||| | |
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| T |
44553498 |
aagtaccaagagaatggaccaaaaggtcctctatgggaggagatatctttagcaatgaagaacctcggttacaataggaatgcaaaaaggtgcaaagaaa |
44553399 |
T |
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| Q |
435 |
aatgggagaacattaacaagtatttcaagaaagtgaaggaaagcaacaagaagaggccagaagattcaaagacatgtccttactttca |
522 |
Q |
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| T |
44553398 |
aatgggagaatataaacaagtacttcaagaaagtgaaagagagtaacaaaaagagacccgaagattcaaagacatgtccttattttca |
44553311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 404 - 484
Target Start/End: Original strand, 44533654 - 44533734
Alignment:
| Q |
404 |
tacaataggaatgcaaagaggtgcaaagagaaatgggagaacattaacaagtatttcaagaaagtgaaggaaagcaacaag |
484 |
Q |
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| T |
44533654 |
tacaataggaatgcaaaaaggtgcaaagaaaaatgggagaatatcaacaaatactacaagaaaatgaaggaaagtaacaag |
44533734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 415 - 461
Target Start/End: Complemental strand, 36127466 - 36127420
Alignment:
| Q |
415 |
tgcaaagaggtgcaaagagaaatgggagaacattaacaagtatttca |
461 |
Q |
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| T |
36127466 |
tgcaaagagatgcaaagagaagtgggagaatatcaacaagtatttca |
36127420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 638
Target Start/End: Complemental strand, 44553205 - 44553171
Alignment:
| Q |
604 |
ggcaccgttgatggttcagccggagcagcagtggc |
638 |
Q |
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| T |
44553205 |
ggcaccgttgatggttcagccggagcagcaatggc |
44553171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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