View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16383_low_3 (Length: 520)

Name: NF16383_low_3
Description: NF16383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16383_low_3
NF16383_low_3
[»] chr1 (3 HSPs)
chr1 (18-514)||(23462200-23462711)
chr1 (30-191)||(24965106-24965274)
chr1 (251-505)||(23449215-23449466)
[»] scaffold0046 (1 HSPs)
scaffold0046 (30-233)||(74431-74638)


Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 514
Target Start/End: Original strand, 23462200 - 23462711
Alignment:
Q  18 cttggttaagccaatacataaatttaagacggcattaccttacaataaacttcattaagctaaattttcgatccaaagtaaatatgaataattttagaca 117  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  23462200 cttggttaagccaatacataaatttaagagggcattatcttacaataaacttcattaagctaaactttcgatccaaagtaaatatgaataattttagaga 23462299  T
Q  118 atccaacttggttaatgtttaagttcagatattgaaactaaaatttgcttgactgccttatcaaacccagcatt---------------ttcagccttca 202  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||    
T  23462300 atccaacttggtcaatgtttaagttcagatattgaaactaaaatttgcttgactgccttatcaaacccagcattgtactgcactggaatttcagccttca 23462399  T
Q  203 cctcttcaatttcagctttcaaatcttcaattacgcctttcaacttgtcaatcatatcttctttgatgagtaattttattttcatcttagaattttcctc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23462400 cctcttcaatttcagctttcaaatcttcaattacgcctttcaacttgtcaatcatatcttctttgatgagtaattttattttcatcttagaattttcctc 23462499  T
Q  303 tgccaaatcttcttcttttaccattgatcgacttttttccaagcttaattcttccaaatttttctccaacttatctacgttcttctccgattcagacaac 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23462500 tgccaaatcttcttcttttaccattgatcgacttttttccaagcttaattcttccaaatttttctccaacttatctacgttcttctccgattcagacaac 23462599  T
Q  403 ttatttcttaattcggtattctcttcaacgtaagacnnnnnnnncttttccaaatcacaaacctttttccccatacaacggacaaggacgaccgattgaa 502  Q
    |||||||||||||||||||||||||||||||||| |        ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23462600 ttatttcttaattcggtattctcttcaacgtaagccttgtttttcttttccaaatcacaaacctttttccccatacaacggacaaagacgaccgattgaa 23462699  T
Q  503 cagtattatcta 514  Q
    ||| ||| ||||    
T  23462700 cagaattttcta 23462711  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 24965106 - 24965274
Alignment:
Q  30 aatacataaatttaagacggcattaccttacaataaacttcattaagctaaattttcgatccaaagtaaatatgaataattttagacaatccaacttgg- 128  Q
    ||||||||| ||||||| |||||| ||| ||||| |||||||| ||| |||| ||||||||||||  |||||||||||||| || ||||||||||||||     
T  24965106 aatacataagtttaagagggcatttcctcacaatgaacttcatcaaggtaaaatttcgatccaaaagaaatatgaataattataaacaatccaacttggt 24965205  T
Q  129 ------ttaatgtttaagttcagatattgaaactaaaatttgcttgactgccttatcaaacccagcatt 191  Q
          ||||  |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24965206 caaggtttaacttttaagtttagatattgaaactaaaatttgcttgaccgccttatcaaacccagcatt 24965274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 251 - 505
Target Start/End: Complemental strand, 23449466 - 23449215
Alignment:
Q  251 caatcatatcttctttgatgagtaattttattttcatcttagaattttcctctgccaaatcttcttcttttaccattgatcgacttttttccaagcttaa 350  Q
    |||| |||||||||||||  |||||||||||||  ||||||||||||||||||  ||| | |||||||||| ||||| || |||| |||||| |||||||    
T  23449466 caataatatcttctttgacaagtaattttatttgaatcttagaattttcctctatcaagttttcttctttttccattaattgactcttttccgagcttaa 23449367  T
Q  351 ttcttccaaatttttctccaacttatctacgttcttctccgattcagacaacttatttcttaattcggtattctcttcaacgtaagacnnnnnnnncttt 450  Q
    |||||||||||||| || |||| || |||| | ||||||  ||||||||||||| ||||  ||||| ||||||||||||| | ||| |        ||||    
T  23449366 ttcttccaaattttccttcaacctacctacatccttctcatattcagacaactt-tttc--aattcagtattctcttcaatgcaagccttatttttcttt 23449270  T
Q  451 tccaaatcacaaacctttttccccatacaacggacaaggacgaccgattgaacag 505  Q
    |||||||||| |||| |||||||||||| ||| ||||| |  |||||| ||||||    
T  23449269 tccaaatcacgaaccattttccccatactacgaacaagaaacaccgatcgaacag 23449215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 74431 - 74638
Alignment:
Q  30 aatacataaatttaagacggcattaccttacaataaacttcattaagctaaattttcgatccaaagtaaatatgaataattttagacaatccaacttggt 129  Q
    ||||||||| ||||||| |||||| ||| ||||| |||||||| ||| |||| ||||||||||||  |||||||||||||| || |||||||||||||||    
T  74431 aatacataagtttaagagggcatttcctcacaatgaacttcatcaaggtaaaatttcgatccaaaagaaatatgaataattataaacaatccaacttggt 74530  T
Q  130 taatgtttaagttcagatattgaaactaaaatttgcttgactgccttatcaaacccagcat---------------tttcagccttcacctcttcaattt 214  Q
     ||            ||||||||||||||||||||||||||   |||||||||||||||||               |||||| |||||||||||||||||    
T  74531 caa-----------ggatattgaaactaaaatttgcttgaccatcttatcaaacccagcattgtgctgcactggaatttcagtcttcacctcttcaattt 74619  T
Q  215 cagctttcaaatcttcaat 233  Q
    |||||||||||||||||||    
T  74620 cagctttcaaatcttcaat 74638  T

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