View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16383_low_4 (Length: 497)
Name: NF16383_low_4
Description: NF16383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16383_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 5 - 480
Target Start/End: Original strand, 27643059 - 27643534
Alignment:
| Q |
5 |
aatgcaattcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacc |
104 |
Q |
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|||||||||||| ||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27643059 |
aatgcaattcaatgtttgtagacgggtatgagtttcatctccctcaacttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacc |
27643158 |
T |
|
| Q |
105 |
catagttcttactcttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtctt |
204 |
Q |
| |
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|||| | |||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27643159 |
cataatccttacttttgttcatactagatacatgttgaaactgaaaccgcagaactggcaccgttgcttcaaaggaagcaatttcctccaatttggtctt |
27643258 |
T |
|
| Q |
205 |
atgaagcccatattcctccacaatcaagtcccaaatctcacccttatcacgcattaactccgccaaatcaaactcttccttgtcattcaactccacaaac |
304 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27643259 |
atgaagcccatattcctccacaatcaggtcccaaatctcacccttatcacgcattaactccaccaaatcaaactcttccttgtcattcaactccacaaac |
27643358 |
T |
|
| Q |
305 |
ttaacatcaaaaacctcactaagcaacatccacatactcttccaagtgaaaacatcaccatttgtgcaattgaacgcttggttcttcacatcttctgtaa |
404 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
27643359 |
ttaacattaaaaacctcactaagcaacatccacatactcttccaagtgaaaacatcaccatttgtgcaattgaaagcttggttcttcgcatcttctgtaa |
27643458 |
T |
|
| Q |
405 |
ctgcagcccacacatgttgttttgcaagcatgcccgcatccgtcatatcacagaaatgctcccaagtgtatttgtt |
480 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27643459 |
ctgcagcccacacatgttgttttgcaagcacgcccgcatccgtcatatcacagaaatgctcccaagtgtatttgtt |
27643534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 50247819 - 50247362
Alignment:
| Q |
18 |
gttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacccatagttcttact |
117 |
Q |
| |
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|||||||| ||| ||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| || |||||||| | ||||| |
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| T |
50247819 |
gttggtaggagggtataagtttcatctccctcagcttagccacccagagtttgatactcttaaacgtatcagcatactctaaaaacccataatctttact |
50247720 |
T |
|
| Q |
118 |
cttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtcttatgaagcccatat |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | || ||||| | ||||||||| |||||||||||| ||| ||||||||||||||||||||| |
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| T |
50247719 |
cttgttcatactagatacatgttgaaactcaaaccgtacaactggcaccatggcttcaaagcaagcaatttccttcaacttggtcttatgaagcccatat |
50247620 |
T |
|
| Q |
218 |
tcctccacaatcaagtcccaaatctcacccttatcacgcattaactccgccaaatcaaactcttccttgtcattcaactccacaaacttaacatcaaaaa |
317 |
Q |
| |
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| ||| |||||||||||||||| ||||||||| |||||||| ||||| | |||||||||||| || |||| |||||| ||||||| ||||||||||| |
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| T |
50247619 |
ttctctacaatcaagtcccaaacctcacccttgtcacgcatcaactcaatgatatcaaactcttctttatcatccaactcaacaaactcaacatcaaaaa |
50247520 |
T |
|
| Q |
318 |
cctcactaagcaacatccacatactcttccaagtgaaaacatcaccatttgtgcaattgaacgcttggttcttcacatcttctgtaactgcagcccacac |
417 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| || ||||||||||| | | | ||||||| |||||||||| |
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| T |
50247519 |
cctcactaagcaacatccacatactcttccaagtgaaaatgtcaccgtttgtacaattaaatgcttggttcttagctttctttgtaactccagcccacac |
50247420 |
T |
|
| Q |
418 |
atgttgttttgcaagcatgcccgcatccgtcatatcacagaaatgctcccaagtgtat |
475 |
Q |
| |
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|||||| ||||| |||| || ||||| | ||||||||| |||||||||||||||||| |
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|
| T |
50247419 |
atgttgctttgccagcacacctgcatctgacatatcacaaaaatgctcccaagtgtat |
50247362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 12 - 474
Target Start/End: Complemental strand, 50254962 - 50254500
Alignment:
| Q |
12 |
ttcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacccatagtt |
111 |
Q |
| |
|
||||| ||| ||||| || |||||| ||||||||||||||||| |||||||||| | | ||| |||||||| || ||||||||||| ||| |||| || |
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| T |
50254962 |
ttcaatgttcgtagatgggtatgagattcatctccctcagcttcatcacccagaatttcacactattaaacgtctcagcatactcaaaaaactcataatt |
50254863 |
T |
|
| Q |
112 |
cttactcttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtcttatgaagc |
211 |
Q |
| |
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|||||||| ||||||||||||||| ||||||||||||| || | || ||||| || ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
50254862 |
tttactcttattcatactagatacaagttgaaactcaaatcgaaaaactggcaccaaggcatcaaaacaagcaatttcctccaatttggtcttatgaagt |
50254763 |
T |
|
| Q |
212 |
ccatattcctccacaatcaagtcccaaatctcacccttatcacgcattaactccgccaaatcaaactcttccttgtcattcaactccacaaacttaacat |
311 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||||||||||||||| |||| | ||||||||||||||||||| |||| ||| ||||||||||||||| |
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|
| T |
50254762 |
ccatactcctccacaatctgatcccaaacctcacccttatcacgcataaactgcaccaaatcaaactcttccttttcatccaaatccacaaacttaacag |
50254663 |
T |
|
| Q |
312 |
caaaaacctcactaagcaacatccacatactcttccaagtgaaaacatcaccatttgtgcaattgaacgcttggttcttcacatcttctgtaactgcagc |
411 |
Q |
| |
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||||| || || ||||| | |||||||||||||||| | |||||| ||||||||||||||||| |||||||||||||| | | | |||||||||||| |
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| T |
50254662 |
caaaagtcttacaaagcaccttccacatactcttccatgcgaaaacgtcaccatttgtgcaattaaacgcttggttcttagccttctttgtaactgcagc |
50254563 |
T |
|
| Q |
412 |
ccacacatgttgttttgcaagcatgcccgcatccgtcatatcacagaaatgctcccaagtgta |
474 |
Q |
| |
|
||| |||||||| ||||| |||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
50254562 |
ccatacatgttgctttgccagcacacgagcatccgtcatatcacagaaatgctcccaagtgta |
50254500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 27646261 - 27646328
Alignment:
| Q |
1 |
agataatgcaattcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatc |
68 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
27646261 |
agataatgcaattcaatgttggtagaagggtatgagtttcatctccctcagcttagccacccagaatc |
27646328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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