View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16383_low_5 (Length: 431)

Name: NF16383_low_5
Description: NF16383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16383_low_5
NF16383_low_5
[»] chr6 (14 HSPs)
chr6 (14-403)||(30258263-30258652)
chr6 (12-107)||(12783905-12783998)
chr6 (12-79)||(29061330-29061395)
chr6 (12-79)||(32034340-32034405)
chr6 (12-49)||(17596764-17596801)
chr6 (12-49)||(29065816-29065853)
chr6 (12-49)||(29074829-29074866)
chr6 (12-49)||(29079593-29079630)
chr6 (12-49)||(29107402-29107439)
chr6 (12-78)||(13401547-13401611)
chr6 (19-49)||(26855983-26856013)
chr6 (14-107)||(6204859-6204954)
chr6 (14-107)||(11691826-11691921)
chr6 (12-48)||(34634281-34634317)
[»] chr3 (28 HSPs)
chr3 (12-170)||(34648150-34648308)
chr3 (14-107)||(41803030-41803121)
chr3 (12-107)||(13896824-13896917)
chr3 (12-107)||(43476224-43476317)
chr3 (14-104)||(51402348-51402436)
chr3 (60-170)||(34645531-34645641)
chr3 (23-107)||(24703374-24703456)
chr3 (12-107)||(34694382-34694475)
chr3 (12-107)||(55385169-55385262)
chr3 (14-78)||(55207613-55207675)
chr3 (12-79)||(19454299-19454364)
chr3 (12-78)||(51696522-51696586)
chr3 (12-76)||(7245155-7245217)
chr3 (12-107)||(36134355-36134449)
chr3 (12-116)||(41577098-41577200)
chr3 (12-78)||(45101796-45101860)
chr3 (12-107)||(4004750-4004844)
chr3 (16-49)||(41137796-41137829)
chr3 (12-49)||(43568954-43568991)
chr3 (12-107)||(52570514-52570607)
chr3 (12-106)||(49609416-49609508)
chr3 (19-49)||(18436767-18436797)
chr3 (66-200)||(30839160-30839294)
chr3 (12-107)||(2271260-2271354)
chr3 (12-49)||(2426572-2426609)
chr3 (15-107)||(46347672-46347762)
chr3 (14-107)||(49140793-49140888)
chr3 (12-107)||(49219739-49219832)
[»] chr4 (26 HSPs)
chr4 (12-93)||(42885495-42885576)
chr4 (12-107)||(56138284-56138377)
chr4 (60-204)||(19682105-19682249)
chr4 (12-107)||(44561278-44561371)
chr4 (12-109)||(958542-958637)
chr4 (12-79)||(34530743-34530808)
chr4 (12-79)||(39588126-39588191)
chr4 (128-201)||(36480599-36480672)
chr4 (12-49)||(56304938-56304975)
chr4 (12-79)||(34154376-34154441)
chr4 (12-79)||(51429277-51429342)
chr4 (129-204)||(243349-243424)
chr4 (14-107)||(28081490-28081582)
chr4 (14-79)||(6283417-6283480)
chr4 (30-107)||(29700268-29700343)
chr4 (14-107)||(55793952-55794047)
chr4 (16-107)||(1041967-1042056)
chr4 (66-170)||(48806454-48806558)
chr4 (130-204)||(4783581-4783655)
chr4 (14-107)||(21017951-21018045)
chr4 (14-107)||(6178056-6178151)
chr4 (14-107)||(49094116-49094211)
chr4 (60-108)||(4783677-4783725)
chr4 (26-77)||(4786296-4786345)
chr4 (129-201)||(40963749-40963821)
chr4 (19-107)||(41795307-41795397)
[»] chr5 (14 HSPs)
chr5 (12-107)||(25497543-25497636)
chr5 (12-104)||(18307289-18307379)
chr5 (12-107)||(542738-542831)
chr5 (14-79)||(42865754-42865817)
chr5 (12-107)||(11346039-11346133)
chr5 (26-107)||(20192385-20192464)
chr5 (12-49)||(1401388-1401425)
chr5 (66-143)||(7762244-7762321)
chr5 (12-107)||(3600369-3600462)
chr5 (12-78)||(35564322-35564386)
chr5 (128-174)||(40788788-40788834)
chr5 (66-107)||(18512652-18512693)
chr5 (14-107)||(19037416-19037511)
chr5 (14-107)||(30708935-30709030)
[»] chr7 (16 HSPs)
chr7 (12-107)||(40587693-40587786)
chr7 (14-116)||(30355189-30355289)
chr7 (12-79)||(21188374-21188439)
chr7 (12-107)||(46863292-46863385)
chr7 (12-107)||(17838682-17838776)
chr7 (12-104)||(41047812-41047902)
chr7 (12-116)||(42682017-42682119)
chr7 (15-107)||(28980123-28980214)
chr7 (12-49)||(34139959-34139996)
chr7 (12-107)||(36394886-36394979)
chr7 (16-78)||(43686859-43686919)
chr7 (14-49)||(48316259-48316294)
chr7 (128-170)||(29097919-29097961)
chr7 (12-49)||(28115480-28115517)
chr7 (128-173)||(30468419-30468464)
chr7 (132-168)||(35840186-35840222)
[»] scaffold0341 (1 HSPs)
scaffold0341 (66-201)||(18057-18192)
[»] chr8 (10 HSPs)
chr8 (12-106)||(41274625-41274717)
chr8 (12-104)||(18441389-18441479)
chr8 (16-104)||(26451515-26451601)
chr8 (14-78)||(41858073-41858135)
chr8 (12-79)||(3395926-3395991)
chr8 (12-49)||(22547531-22547568)
chr8 (66-109)||(16940276-16940319)
chr8 (14-107)||(42602492-42602583)
chr8 (128-205)||(39583355-39583432)
chr8 (130-170)||(42731800-42731840)
[»] chr1 (20 HSPs)
chr1 (66-201)||(6562867-6563002)
chr1 (19-204)||(24364680-24364862)
chr1 (12-107)||(13147528-13147621)
chr1 (12-79)||(14174859-14174924)
chr1 (12-79)||(27487614-27487679)
chr1 (12-78)||(29763167-29763231)
chr1 (12-78)||(42572705-42572769)
chr1 (12-119)||(29709259-29709364)
chr1 (12-49)||(26637204-26637241)
chr1 (14-78)||(49927451-49927513)
chr1 (12-49)||(13972150-13972187)
chr1 (12-49)||(41779767-41779804)
chr1 (12-79)||(44596895-44596960)
chr1 (12-78)||(6434809-6434873)
chr1 (12-63)||(35526983-35527036)
chr1 (12-76)||(49426750-49426813)
chr1 (14-107)||(19159655-19159750)
chr1 (12-49)||(29435060-29435097)
chr1 (26-78)||(49395664-49395714)
chr1 (128-204)||(49502881-49502957)
[»] chr2 (13 HSPs)
chr2 (12-104)||(2648152-2648242)
chr2 (12-107)||(43491141-43491234)
chr2 (12-78)||(2920464-2920528)
chr2 (12-78)||(24512228-24512292)
chr2 (14-107)||(41500184-41500275)
chr2 (12-107)||(29093779-29093869)
chr2 (12-77)||(40679545-40679608)
chr2 (12-104)||(39393072-39393162)
chr2 (132-204)||(29905396-29905468)
chr2 (18-104)||(10365746-10365830)
chr2 (12-49)||(16580574-16580611)
chr2 (66-114)||(2271737-2271785)
chr2 (12-40)||(34638234-34638262)
[»] scaffold0192 (1 HSPs)
scaffold0192 (12-204)||(18847-19037)
[»] scaffold0199 (1 HSPs)
scaffold0199 (12-107)||(12335-12429)
[»] scaffold0176 (1 HSPs)
scaffold0176 (12-49)||(884-921)


Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 403
Target Start/End: Original strand, 30258263 - 30258652
Alignment:
Q  14 agatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgcaactgat 113  Q
    |||||||||||||||||||||||||||  |||||||| |||||  |||||||||||||||||||||  |||||||||||||||||||||||||| |||||    
T  30258263 agatgaataatggatgagagagcttctctcagattttcgtagctgaagattatcggcagttaactgccgagattttcctcgacagttaactgcagctgat 30258362  T
Q  114 tttgaagaaactccgcagttaactgccgagaaatatttggataaattacttgtgtttttcaaccttttcagatgtgtcgacaacaattttctaatctctt 213  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||    
T  30258363 tttgaagaaactccgcagttaactgccgaatgatatttggataaattacttgtgtttttcaacctttccatatgtgtcgacaacaattttctaatatctt 30258462  T
Q  214 tcctactaggacggtaaaaatgaagaagaaaggaataaaatctaccgtaatctatatgggggagggtattcagctagcctaacgactaaaagacaaacaa 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30258463 tcctactaggacggtaaaaatgaagaagaaaggaataaaatctaccgtaatctatatgggggagggtattcagctagcctaacgacaaaaagacaaacaa 30258562  T
Q  314 aacattattcttggttaatgtagtgaatctcagctatccgtaattgaatactccttcactgttgtgagttcgagaaaaacttttggttgg 403  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  30258563 aacattattcttggttaatgtagtgaatctcagctatctgtaattgaatactcctttactgttgtgagttcgagaaaaatttttggttgg 30258652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 12783905 - 12783998
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    ||||||||||||||||||||||||||| | ||||||||  |||||| |||||  |||||||||||||  |||| ||||||||||||| ||||||||    
T  12783905 tgagatgaataatggatgagagagctttttccagattt--gtagcagaagatcctcggcagttaactactgaggttttcctcgacagctaactgca 12783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 29061395 - 29061330
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactg 79  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||| |||||  |||| |||||||||    
T  29061395 tgagatgaataatggatgagagagcttctaccaga--tttgtagcagaagatcctcggaagttaactg 29061330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 32034340 - 32034405
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactg 79  Q
    ||||| ||||||||||| ||||| |||||||||||  ||||||||| ||||| |||||||||||||||    
T  32034340 tgagacgaataatggataagagatcttctgccaga--tttgtagcagaagatcatcggcagttaactg 32034405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 17596764 - 17596801
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  17596764 tgagatgaataatggatgagatagcttctgccagattt 17596801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 29065853 - 29065816
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    |||||||||||||||||||||||||||| |||||||||    
T  29065853 tgagatgaataatggatgagagagcttccgccagattt 29065816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 29074866 - 29074829
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    |||||||||||||||||||||||||||| |||||||||    
T  29074866 tgagatgaataatggatgagagagcttccgccagattt 29074829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 29079630 - 29079593
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    |||||||||||||||||||||||||||| |||||||||    
T  29079630 tgagatgaataatggatgagagagcttccgccagattt 29079593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 29107439 - 29107402
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    |||||||||||||||||||||||||||| |||||||||    
T  29107439 tgagatgaataatggatgagagagcttccgccagattt 29107402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 13401611 - 13401547
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaact 78  Q
    |||||||||||||||||||||||||||||| |  || ||||||||| |||||  |||| ||||||||    
T  13401611 tgagatgaataatggatgagagagcttctgtc--atatttgtagcagaagatcctcggtagttaact 13401547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 26856013 - 26855983
Alignment:
Q  19 aataatggatgagagagcttctgccagattt 49  Q
    |||||||||||||||||||||||||||||||    
T  26856013 aataatggatgagagagcttctgccagattt 26855983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 6204954 - 6204859
Alignment:
Q  14 agatgaataatggatgagag-agcttctgccagatttttgtag--cataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||| ||||||||||||||| || |||||||||||||| ||||  || |||||  |||||||||||||   ||| ||||||||| ||||||||||||    
T  6204954 agatcaataatggatgagaggagattctgccagatttt-gtagtgcagaagatcctcggcagttaactaccgaggttttcctcggcagttaactgca 6204859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 11691921 - 11691826
Alignment:
Q  14 agatgaataatggatgagag-agcttctgccagatttttgtag--cataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||| ||||||||||||||| || |||||||||||||| ||||  || |||||  |||||||||||||   ||| ||||||||| ||||||||||||    
T  11691921 agatcaataatggatgagaggagattctgccagatttt-gtagtgcagaagatcctcggcagttaactaccgaggttttcctcggcagttaactgca 11691826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 34634317 - 34634281
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatt 48  Q
    |||||| |||||||||||||||||||||||| |||||    
T  34634317 tgagataaataatggatgagagagcttctgctagatt 34634281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 34648150 - 34648308
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgcaactg 111  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||  || ||| || ||||  ||| |||||||||   |||||||||| | |    
T  34648150 tgagatgaataatggatgagagagcttctgccagaattttgtagcataagatcctcagcaatttactgccgaggttttcctcggtcgttaactgcagccg 34648249  T
Q  112 attttgaagaaactccgcagttaactgccgagaaatatttggataaattacttgtgttt 170  Q
     ||||||||||||||  ||||||||||| |||   ||||||  |||||||| |||||||    
T  34648250 gttttgaagaaactcgacagttaactgctgaggggtatttgagtaaattacatgtgttt 34648308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 41803121 - 41803030
Alignment:
Q  14 agatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||  |||||||||||||   ||| ||||||||| ||||||||||||    
T  41803121 agatgaataatggatgagagagcttctgccaga--tttgtagcaaaagatcctcggcagttaactaccgaggttttcctcggcagttaactgca 41803030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 13896824 - 13896917
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||||||||||||||||||  ||||||| | || ||  |||||||||||||   ||| ||||||||||||||||||||||    
T  13896824 tgagatgaataatggatgagagagcttctgccaga--tttgtagtagaaaatcttcggcagttaactaccgaggttttcctcgacagttaactgca 13896917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 43476317 - 43476224
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||| |||||  |||||||||||||   ||| ||||||||| ||||||||||||    
T  43476317 tgagatgaataatggatgagagagcttctgtcaga--tttgtagcaaaagatcctcggcagttaactaccgaggttttcctcggcagttaactgca 43476224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 51402348 - 51402436
Alignment:
Q  14 agatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaact 104  Q
    |||||||||||||||||||||||||||| ||||  ||||||||| |||||  |||||||||||||   ||| |||||||||||||||||||    
T  51402348 agatgaataatggatgagagagcttctgacaga--tttgtagcagaagatcctcggcagttaactaccgaggttttcctcgacagttaact 51402436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 170
Target Start/End: Complemental strand, 34645641 - 34645531
Alignment:
Q  60 agattatcggcagttaactgttgagattttcctcgacagttaactgcaactgattttgaagaaactccgcagttaactgccgagaaatatttggataaat 159  Q
    ||||| ||||||||||||||  ||| |||||||||| |||||||||||   | |||||||||||||| |||||||||||||||   |||||| | |||||    
T  34645641 agattttcggcagttaactgccgaggttttcctcgagagttaactgcagtcggttttgaagaaactcggcagttaactgccgaaggatatttaggtaaat 34645542  T
Q  160 tacttgtgttt 170  Q
    |||| ||||||    
T  34645541 tactcgtgttt 34645531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 24703374 - 24703456
Alignment:
Q  23 atggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||||||||||  |||||| ||||| ||||||||||||||  ||||  |||||||| ||||||||||||    
T  24703374 atggatgagagagcttctgccagattt--gtagcagaagatcatcggcagttaactcctgaggatttcctcggcagttaactgca 24703456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 34694382 - 34694475
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| |||||  |||||||||||||   ||| |||| |||| ||||| ||||||    
T  34694382 tgagatgaataatggatgagagagcttctgccaga--tttgtagcagaagatcctcggcagttaactcccgaggtttttctcggcagtttactgca 34694475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 55385262 - 55385169
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||| ||||||||||||||||||||||||||||  ||||||||| |||||  ||| |||||||||   ||| ||||||||| ||||||||||||    
T  55385262 tgagattaataatggatgagagagcttctgccaga--tttgtagcagaagatcctcgacagttaactaccgaggttttcctcggcagttaactgca 55385169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 55207613 - 55207675
Alignment:
Q  14 agatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaact 78  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||  |||||||||||||    
T  55207613 agatgaataatggatgagagagcttctgccaga--tttgtagcagaagatcctcggcagttaact 55207675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 19454299 - 19454364
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactg 79  Q
    |||||||||||||||||||||||||||||||||||  ||||||| | |||||  ||||||||||||||    
T  19454299 tgagatgaataatggatgagagagcttctgccaga--tttgtagtagaagatcctcggcagttaactg 19454364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 51696522 - 51696586
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaact 78  Q
    |||||||||||||||||||||||||||||||||||  |||| |||| |||||  |||||||||||||    
T  51696522 tgagatgaataatggatgagagagcttctgccaga--tttgcagcagaagatcctcggcagttaact 51696586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 7245217 - 7245155
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaa 76  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||| |||||  |||||||||||    
T  7245217 tgagatgaataatggatgagagagcttctgtcaga--tttgtagcagaagatactcggcagttaa 7245155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 36134449 - 36134355
Alignment:
Q  12 tgagatgaataatggatgagag-agcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    ||||||||||||||||| |||| || |||||||||||||  |||||| |||||  |||||||||||||   ||| ||||||||| ||||||||||||    
T  36134449 tgagatgaataatggataagaggagattctgccagattt--gtagcagaagatcctcggcagttaactcccgaggttttcctcggcagttaactgca 36134355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 41577200 - 41577098
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgcaactg 111  Q
    ||||||| ||||||||||||||||||||||| |||  ||||||||| |||||  ||||||||| |||   ||  ||||  |||||||||||||||||| |    
T  41577200 tgagatggataatggatgagagagcttctgcaaga--tttgtagcagaagatcctcggcagtttactaccgaagtttttgtcgacagttaactgcaaccg 41577103  T
Q  112 atttt 116  Q
    |||||    
T  41577102 atttt 41577098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 45101796 - 45101860
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaact 78  Q
    |||||||||||||  ||||||||||||||||||||  ||||||||| |||||  |||||||||||||    
T  45101796 tgagatgaataatatatgagagagcttctgccaga--tttgtagcagaagatcctcggcagttaact 45101860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 4004750 - 4004844
Alignment:
Q  12 tgagatgaataatggatgagag-agcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||||| || ||||||||| |||  |||||| |||||  ||||||||||| |   ||| ||||||||| ||||||||||||    
T  4004750 tgagatgaataatggatgagaggagattctgccaggttt--gtagcagaagatcctcggcagttaagtaccgaggttttcctcggcagttaactgca 4004844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 41137829 - 41137796
Alignment:
Q  16 atgaataatggatgagagagcttctgccagattt 49  Q
    ||||||||||||||||||||||||||||||||||    
T  41137829 atgaataatggatgagagagcttctgccagattt 41137796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 43568991 - 43568954
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    |||||||||||||||||||||||||||||| |||||||    
T  43568991 tgagatgaataatggatgagagagcttctgtcagattt 43568954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 52570514 - 52570607
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||| ||||||||| ||||||||||  ||||||| | |||||  |||||||||||||   ||| |||| ||||  |||||||||||    
T  52570514 tgagatgaataatgaatgagagagtttctgccaga--tttgtagtagaagatcctcggcagttaactaccgaggtttttctcggtagttaactgca 52570607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 49609508 - 49609416
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgc 106  Q
    |||||||||||||| || ||||||||| |||||||  ||||||||| ||| |  |||||||||||||   ||| |||| ||||||| ||||||||    
T  49609508 tgagatgaataatgaataagagagcttatgccaga--tttgtagcagaagttcctcggcagttaactaccgaggtttttctcgacaattaactgc 49609416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 18436797 - 18436767
Alignment:
Q  19 aataatggatgagagagcttctgccagattt 49  Q
    |||||||||||||||||||||||||||||||    
T  18436797 aataatggatgagagagcttctgccagattt 18436767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 200
Target Start/End: Original strand, 30839160 - 30839294
Alignment:
Q  66 tcggcagttaactgttgagattttcctcgacagttaactgcaactgattttgaagaaactccgcagttaactgccgagaaatatttggataaattacttg 165  Q
    ||||||||||||||  ||| ||||||| |  ||||||||||| | | |||||||    |||  ||||||||||||||||  ||||||| ||| |||| ||    
T  30839160 tcggcagttaactgccgaggttttccttgggagttaactgcagccggttttgaactgtctcgacagttaactgccgagaggtatttgggtaatttacatg 30839259  T
Q  166 tgtttttcaaccttttcagatgtgtcgacaacaat 200  Q
    ||||||| |||| | ||| | ||||| ||||||||    
T  30839260 tgttttttaaccatatcaaacgtgtcaacaacaat 30839294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 2271260 - 2271354
Alignment:
Q  12 tgagatgaataatggatgaga-gagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||| |||||||||| ||| ||||||||||  ||||||||| |||||  |||||||||||||   |||  || ||||| ||||||||||||    
T  2271260 tgagatgaattatggatgagaggagattctgccaga--tttgtagcagaagatcctcggcagttaactcccgaggattccctcggcagttaactgca 2271354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 2426609 - 2426572
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  2426609 tgagatgaataatgaatgagagagcttctgccaaattt 2426572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 46347672 - 46347762
Alignment:
Q  15 gatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||| |||||||||||||| |||| || |||||  |||||| |||||  ||| ||||||| | | ||| ||||||||| ||||||||||||    
T  46347672 gatgaacaatggatgagagagtttctccctgattt--gtagcagaagatcttcgacagttaattatcgaggttttcctcggcagttaactgca 46347762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 49140793 - 49140888
Alignment:
Q  14 agatgaataatggatgagag-agcttctgccagatttttgtag--cataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||| ||||||||||||||| || |||||||||||||| ||||  || ||| |  |||||||||||||  |||| ||||||||| ||||||||||||    
T  49140793 agatcaataatggatgagaggagattctgccagatttt-gtagtgcagaagttcctcggcagttaactactgaggttttcctcggcagttaactgca 49140888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 49219739 - 49219832
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||| ||||||||||| || |  ||||||||| |||||  |||  ||||||||    || ||||||||| ||||||||||||    
T  49219739 tgagatgaataatggatgggagagcttctgtcaaa--tttgtagcagaagatcctcgatagttaactaccaaggttttcctcggcagttaactgca 49219832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 42885576 - 42885495
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctc 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||  ||| ||||||||    
T  42885576 tgagatgaataatggatgagagagcttctgccagatttttgtagcagaagatcatcggcagttaactgccgaggttttcctc 42885495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 56138377 - 56138284
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| |||||  |||||||||||||  |||| ||||||||| ||||||||||||    
T  56138377 tgagatgaataatggatgagagagcttctgccaga--tttgtagcagaagatcctcggcagttaactactgaggttttcctcggcagttaactgca 56138284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 19682105 - 19682249
Alignment:
Q  60 agattatcggcagttaactgttgagattttcctcgacagttaactgcaactgattttgaagaaactccgcagttaactgccgagaaatatttggataaat 159  Q
    |||| |||||||||||||||   | ||||||||||   |||||||||| | ||||||||||||||||   |||||||||||||  ||||||| |||||||    
T  19682105 agatcatcggcagttaactgccaaaattttcctcgggcgttaactgcagccgattttgaagaaactcatgagttaactgccgaagaatatttagataaat 19682204  T
Q  160 tacttgtgtttttcaaccttttcagatgtgtcgacaacaattttc 204  Q
    |||| || ||||||| ||||| || | ||| | ||||||||||||    
T  19682205 tactcgtatttttcagcctttgcatacgtgacaacaacaattttc 19682249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 44561278 - 44561371
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| | |||  |||||||||||||   |||||||||||||  |||||||||||    
T  44561278 tgagatgaataatggatgagagagcttctgccaga--tttgtagcagacgatcctcggcagttaactaccgagattttcctcggtagttaactgca 44561371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 958542 - 958637
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgcaac 109  Q
    ||||| |||||||||||||||||||||||||| ||  ||||||||| |||||  |||||||||||||   ||| ||||||||| ||||||||||||||    
T  958542 tgagaagaataatggatgagagagcttctgccgga--tttgtagcagaagatcctcggcagttaactaccgaggttttcctcggcagttaactgcaac 958637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 34530743 - 34530808
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactg 79  Q
    ||||||||||||||||||||||||||||||||| |  ||||||||| |||||  ||||||||||||||    
T  34530743 tgagatgaataatggatgagagagcttctgccaaa--tttgtagcagaagatcctcggcagttaactg 34530808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 39588191 - 39588126
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactg 79  Q
    ||||||||||||||||||||||||||||||||  || ||||||||| |||||  ||||||||||||||    
T  39588191 tgagatgaataatggatgagagagcttctgcc--atatttgtagcagaagatcctcggcagttaactg 39588126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 36480599 - 36480672
Alignment:
Q  128 gcagttaactgccgagaaatatttggataaattacttgtgtttttcaaccttttcagatgtgtcgacaacaatt 201  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||| ||  | || ||||||| |||||||||    
T  36480599 gcagttaactgccgaggaacatttggataaattacttgtgtttatcagccaatgcatatgtgtcaacaacaatt 36480672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 56304975 - 56304938
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    ||||||||||||||||||||||||||||||||||||||    
T  56304975 tgagatgaataatggatgagagagcttctgccagattt 56304938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 34154376 - 34154441
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactg 79  Q
    ||||||||||||| |||||||||||||||||||||  ||||||||| |||||  || |||||||||||    
T  34154376 tgagatgaataatagatgagagagcttctgccaga--tttgtagcagaagatcctctgcagttaactg 34154441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 51429277 - 51429342
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactg 79  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||| |||||  ||| ||||||||||    
T  51429277 tgagatgaataatggatgagagagcttcttccaga--tttgtagcagaagatcctcgacagttaactg 51429342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 243349 - 243424
Alignment:
Q  129 cagttaactgccgagaaatatttggataaattacttgtgtttttcaaccttttcagatgtgtcgacaacaattttc 204  Q
    ||||||||||| |||| |||||| ||||||||||| |||||| ||  ||||| || ||||||| ||||||||||||    
T  243349 cagttaactgctgagagatatttagataaattactcgtgtttctcggcctttgcatatgtgtcaacaacaattttc 243424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 28081582 - 28081490
Alignment:
Q  14 agatgaataatggatgagag-agcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||| || |||||||||||||  |||||| |||||  ||| || ||||||   ||||||||||||| ||||||||||||    
T  28081582 agatgaataatggatgagaggagattctgccagattt--gtagcagaagatcctcgacacttaactaacgagattttcctcggcagttaactgca 28081490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 6283417 - 6283480
Alignment:
Q  14 agatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactg 79  Q
    |||||||||||||||||||||||||| ||||||  |||| |||| |||||  ||||||||||||||    
T  6283417 agatgaataatggatgagagagcttcggccaga--tttgaagcagaagatcctcggcagttaactg 6283480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 29700268 - 29700343
Alignment:
Q  30 agagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    ||||||||||||||||||||  |||||| ||||| ||||||| ||||||   ||| ||||||||| ||||||||||||    
T  29700268 agagagcttctgccagattt--gtagcagaagatcatcggcaattaactaccgaggttttcctcggcagttaactgca 29700343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 55794047 - 55793952
Alignment:
Q  14 agatgaataatggatgagag-agcttctgccagatttttgtag--cataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||| || |||||||||||||| ||||  || |||||  |||||||||||||   ||| ||||||||| ||||||||||||    
T  55794047 agatgaataatggatgagaggagattctgccagatttt-gtagtgcagaagatcctcggcagttaactcccgaggttttcctcggcagttaactgca 55793952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 1042056 - 1041967
Alignment:
Q  16 atgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    ||||| |||| |||||||||||| ||||||||||  |||| | |||||  |||||||||||||   |||||||| |||| ||||||||||||    
T  1042056 atgaacaatgaatgagagagcttatgccagattt--gtagtagaagatcctcggcagttaactaccgagatttttctcggcagttaactgca 1041967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 48806558 - 48806454
Alignment:
Q  66 tcggcagttaactgttgagattttcctcgacagttaactgcaactgattttgaagaaactccgcagttaactgccgagaaatatttggataaattacttg 165  Q
    |||||||||||||| ||| |||||||||| |||||||||||| | | || |  | ||  ||  |||||||||||||| |  ||||||||||||||||| |    
T  48806558 tcggcagttaactgctgaaattttcctcggcagttaactgcagccggttctttaaaatttcgacagttaactgccgaaaggtatttggataaattactcg 48806459  T
Q  166 tgttt 170  Q
    |||||    
T  48806458 tgttt 48806454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 4783655 - 4783581
Alignment:
Q  130 agttaactgccgagaaatatttggataaattacttgtgtttttcaaccttttcagatgtgtcgacaacaattttc 204  Q
    |||||||||||||||  ||||||  ||||||||| |||||| ||| ||||| ||  |||||| ||||||||||||    
T  4783655 agttaactgccgagaggtatttgagtaaattactcgtgtttctcagcctttgcatttgtgtcaacaacaattttc 4783581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 21017951 - 21018045
Alignment:
Q  14 agatgaataatggatgagag-agcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    ||||||||||| |||||||| || ||||||||||||| |    || ||||| |||||||||||||||  ||| ||||||||| ||||||| ||||    
T  21017951 agatgaataatagatgagaggagattctgccagatttgtagctcagaagatcatcggcagttaactgccgaggttttcctcggcagttaattgca 21018045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 6178056 - 6178151
Alignment:
Q  14 agatgaataatggatgagag-agcttctgccagatttttgtag--cataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||| ||||||||||||||| || |||||||||||||| ||||  || |||||  |||||||||||||   ||| ||||||||| ||||||||||||    
T  6178056 agatcaataatggatgagaggagattctgccagatttt-gtagtgcagaagatcctcggcagttaactaccgaggttttcctcggcagttaactgca 6178151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 49094211 - 49094116
Alignment:
Q  14 agatgaataatggatgagag-agcttctgccagatttttgtag--cataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||| ||||||||||||||| || |||||||||||||| ||||  || |||||  |||||||||||||   ||| ||||||||| ||||||||||||    
T  49094211 agatcaataatggatgagaggagattctgccagatttt-gtagtgcagaagatcctcggcagttaactaccgaggttttcctcggcagttaactgca 49094116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 4783725 - 4783677
Alignment:
Q  60 agattatcggcagttaactgttgagattttcctcgacagttaactgcaa 108  Q
    ||||||||||||||||||||  ||  ||||||||| |||||||||||||    
T  4783725 agattatcggcagttaactgccgaagttttcctcggcagttaactgcaa 4783677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 4786296 - 4786345
Alignment:
Q  26 gatgagagagcttctgccagatttttgtagcataagattatcggcagttaac 77  Q
    ||||||||||||||| ||||||||  |||||| ||||| |||||||||||||    
T  4786296 gatgagagagcttctaccagattt--gtagcagaagatcatcggcagttaac 4786345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 40963749 - 40963821
Alignment:
Q  129 cagttaactgccgagaaatatttggataaattacttgtgtttttcaaccttttcagatgtgtcgacaacaatt 201  Q
    |||||||||||||||| ||||||  |||||||| |||||||| ||| ||  | || ||||||| |||||||||    
T  40963749 cagttaactgccgagagatatttaaataaattatttgtgtttatcagccaatgcatatgtgtcaacaacaatt 40963821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 41795307 - 41795397
Alignment:
Q  19 aataatggatgagag-agcttctgccagatttttgtag--cataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    ||||||||||||||| || |||||||||||||| ||||  || |||||  |||||||||||||   ||| ||||||||| ||||||||||||    
T  41795307 aataatggatgagaggagattctgccagatttt-gtagtgcagaagatcctcggcagttaactaacgaggttttcctcggcagttaactgca 41795397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 25497636 - 25497543
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||||||||||||||| |||||  |||||| |||||| |||||||||||||   ||||||||||||| ||||||||||||    
T  25497636 tgagatgaataatggatgagagagcttctgcctgattt--gtagcagaagattctcggcagttaactaccgagattttcctcggcagttaactgca 25497543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 18307379 - 18307289
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaact 104  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||| |||||  |||||||||||||   ||| ||||||||| |||||||||    
T  18307379 tgagatgaataatggatgagagggcttctgccaga--tttgtagcagaagatcctcggcagttaactaccgaggttttcctcggcagttaact 18307289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 542738 - 542831
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||| |||||  |||||||||||||   |||| |||||||| |||||| |||||    
T  542738 tgagatgaataatggatgagagaacttctgccaga--tttgtagcagaagatcctcggcagttaactaccgagagtttcctcggcagttagctgca 542831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 42865754 - 42865817
Alignment:
Q  14 agatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactg 79  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||  |||||| |||||||    
T  42865754 agatgaataatggatgagagagcttctgccaga--tttgtagcagaagatcctcggcaattaactg 42865817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 11346133 - 11346039
Alignment:
Q  12 tgagatgaataatggatgagag-agcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||||| || |||||||||||||  |||||| |||||  ||| |||||||||   ||| ||||||||| ||||||||||||    
T  11346133 tgagatgaataatggatgagaggagattctgccagattt--gtagcagaagatcctcgacagttaactaccgaggttttcctcggcagttaactgca 11346039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 20192464 - 20192385
Alignment:
Q  26 gatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||||  ||||||||| |||||  |||||| |||||| | ||  ||||||||| ||||||||||||    
T  20192464 gatgagagagcttctgccaga--tttgtagcagaagatcctcggcatttaactatcgaagttttcctcggcagttaactgca 20192385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 1401388 - 1401425
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  1401388 tgagatgaataatggatgagagagcttctgctagattt 1401425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 7762244 - 7762321
Alignment:
Q  66 tcggcagttaactgttgagattttcctcgacagttaactgcaactgattttgaagaaactccgcagttaactgccgag 143  Q
    |||||||||||||  |||| |||||||||||||||||||||||| || |||  | ||  || ||||||||||||||||    
T  7762244 tcggcagttaactcctgaggttttcctcgacagttaactgcaaccgaatttctaaaacttcggcagttaactgccgag 7762321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 3600462 - 3600369
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||| |||| ||| |||||| |||||||  |||||| |||||  ||||| ||||||| | ||| ||||||| | ||||||||||||    
T  3600462 tgagatgaataatgcatgaaagaacttctgtcagattt--gtagcagaagatcctcggctgttaactatcgaggttttccttggcagttaactgca 3600369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 35564386 - 35564322
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaact 78  Q
    |||| |||||||||||||||||||||| |||||||  ||||||||| |||||  || ||||||||||    
T  35564386 tgaggtgaataatggatgagagagcttatgccaga--tttgtagcagaagatcctcagcagttaact 35564322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 40788788 - 40788834
Alignment:
Q  128 gcagttaactgccgagaaatatttggataaattacttgtgtttttca 174  Q
    |||||||||||||||| |  |||||||||||||||| ||||||||||    
T  40788788 gcagttaactgccgaggagcatttggataaattactcgtgtttttca 40788834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 18512652 - 18512693
Alignment:
Q  66 tcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||| ||| |||||||||||||| ||||||||||||    
T  18512652 tcggcagttagctgctgagattttcctcggcagttaactgca 18512693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 19037416 - 19037511
Alignment:
Q  14 agatgaataatggatgagag-agcttctgccagatttttgtag--cataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||| ||||||||||||||| || |||||||||||||| ||||  || |||||  |||||||||||||   ||| ||||||||| ||||||||||||    
T  19037416 agatcaataatggatgagaggagattctgccagatttt-gtagtgcagaagatcctcggcagttaactaccgaggttttcctcggcagttaactgca 19037511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 30709030 - 30708935
Alignment:
Q  14 agatgaataatggatgagag-agcttctgccagatttttgtagc--ataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||| ||||||||||||||| || |||||||||||||| |||||  |||||||  |||||||||||||   ||| ||| ||||| ||||||||||||    
T  30709030 agatcaataatggatgagaggagattctgccagatttt-gtagcgcataagatcctcggcagttaactcccgaggtttccctcggcagttaactgca 30708935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 40587786 - 40587693
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||||||||||||  ||||||| |  ||||||||||  |||||||||||||  |||| ||||||||||||||||||||||    
T  40587786 tgagatgaataatggatgagagagcttctttcagatttat--agcataagatcctcggcagttaactactgaggttttcctcgacagttaactgca 40587693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 30355189 - 30355289
Alignment:
Q  14 agatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgcaactgat 113  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||  |||||||||||||   ||| ||||||||| |||||||||||| | |||    
T  30355189 agatgaataatggatgagagagcttctgccaga--tttgtagcagaagatcctcggcagttaactaccgaggttttcctcggcagttaactgcagccgat 30355286  T
Q  114 ttt 116  Q
    |||    
T  30355287 ttt 30355289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 21188374 - 21188439
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactg 79  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| |||||  ||||||||||||||    
T  21188374 tgagatgaataatggatgagagagcttctgccaga--tttgtagcagaagatcctcggcagttaactg 21188439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 46863292 - 46863385
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    ||||||||||||||||||| |||||||||||||||  ||||||||| |||||  |||||||||||||   ||||||||| |   ||||||||||||    
T  46863292 tgagatgaataatggatgaaagagcttctgccaga--tttgtagcagaagatcttcggcagttaactacagagattttcgttcgcagttaactgca 46863385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 17838776 - 17838682
Alignment:
Q  12 tgagatgaataatggatgagag-agcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||||| || |||||||||||||  |||||| |||||  ||||||||||||| | ||| |||||||||  |||| ||||||    
T  17838776 tgagatgaataatggatgagaggagattctgccagattt--gtagcagaagatcgtcggcagttaactatcgaggttttcctcggtagtttactgca 17838682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 41047902 - 41047812
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaact 104  Q
    ||||||||||||||||||||||||||||  |||||  ||||||||| |||||  |||||||||||||   ||  ||||||||| |||||||||    
T  41047902 tgagatgaataatggatgagagagcttcctccaga--tttgtagcagaagatcctcggcagttaactaccgaagttttcctcggcagttaact 41047812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 42682119 - 42682017
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgcaactg 111  Q
    ||||||||||||||||||||||| ||| ||| |||  ||||||||| |||||  ||||||||||| |   ||| ||||||||| |||||||||||| |||    
T  42682119 tgagatgaataatggatgagagaacttatgctaga--tttgtagcagaagatcctcggcagttaattaccgaggttttcctcggcagttaactgcagctg 42682022  T
Q  112 atttt 116  Q
     ||||    
T  42682021 gtttt 42682017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 28980123 - 28980214
Alignment:
Q  15 gatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcc-tcgacagttaactgca 107  Q
    ||||||||||||||||||||||||||| ||||  ||||||||| || ||  |||||||||||||   ||| |||||| ||| ||||||||||||    
T  28980123 gatgaataatggatgagagagcttctgtcaga--tttgtagcagaaaatcctcggcagttaactaccgaggttttccttcggcagttaactgca 28980214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 34139996 - 34139959
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  34139996 tgagatgaataatggataagagagcttctgccagattt 34139959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 36394886 - 36394979
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||| ||||| ||||||||||||||||||||||  ||||||||| |||||  |||| ||||||||   ||| ||||||||| || |||| ||||    
T  36394886 tgagattaataacggatgagagagcttctgccaga--tttgtagcagaagatcctcggtagttaactaccgaggttttcctcggcacttaattgca 36394979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 43686859 - 43686919
Alignment:
Q  16 atgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaact 78  Q
    ||||||||||||||||||||||| || ||||  ||||||||| || ||| |||||||||||||    
T  43686859 atgaataatggatgagagagcttatgtcaga--tttgtagcagaaaattctcggcagttaact 43686919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 48316259 - 48316294
Alignment:
Q  14 agatgaataatggatgagagagcttctgccagattt 49  Q
    |||| |||||||||||||||||||||||||||||||    
T  48316259 agattaataatggatgagagagcttctgccagattt 48316294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 29097919 - 29097961
Alignment:
Q  128 gcagttaactgccgagaaatatttggataaattacttgtgttt 170  Q
    ||||||||||||||||  |||||||||||||||||| ||||||    
T  29097919 gcagttaactgccgagggatatttggataaattactcgtgttt 29097961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 28115480 - 28115517
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  28115480 tgagatgaataatggatgagagagcttatgctagattt 28115517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 30468464 - 30468419
Alignment:
Q  128 gcagttaactgccgagaaatatttggataaattacttgtgtttttc 173  Q
    |||||||| ||||||||| ||||| ||||||||||| |||||||||    
T  30468464 gcagttaaatgccgagaagtatttagataaattactagtgtttttc 30468419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 35840186 - 35840222
Alignment:
Q  132 ttaactgccgagaaatatttggataaattacttgtgt 168  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  35840186 ttaactgccgagaaacattttgataaattacttgtgt 35840222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 66 - 201
Target Start/End: Original strand, 18057 - 18192
Alignment:
Q  66 tcggcagttaactgttgagattttcctcgacagttaactgcaactgattttgaagaaactccgcagttaactgccgagaaatatttggataaattacttg 165  Q
    ||||||||||||||| ||| ||||| |||  ||||||||||| | | |||||||    ||| ||||||||||||||||  |||||||||||| |||| ||    
T  18057 tcggcagttaactgtcgaggttttcttcggtagttaactgcagccggttttgaaccgtctcggcagttaactgccgagggatatttggataatttacatg 18156  T
Q  166 tgtttttcaaccttttcagatgtgtcgacaacaatt 201  Q
    |||||||||||| | ||| ||||||| ||| |||||    
T  18157 tgtttttcaaccctatcaaatgtgtcaacagcaatt 18192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 41274717 - 41274625
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgc 106  Q
    |||||||||||||||||||||||||||||||||||  ||| ||| | |||||| |||||||||||||   ||||||||||||| || ||||||||    
T  41274717 tgagatgaataatggatgagagagcttctgccaga--tttatagtagaagattctcggcagttaactaccgagattttcctcggcaattaactgc 41274625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 18441389 - 18441479
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaact 104  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||| |||||  ||||||||||||||  ||| |||| |||| |||||||||    
T  18441389 tgagatgaataatggatgagagagtttctgccaga--tttgtagcagaagatcctcggcagttaactgccgaggtttttctcggcagttaact 18441479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 26451601 - 26451515
Alignment:
Q  16 atgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaact 104  Q
    ||||||||| |||||||||||||||||||||  ||||||||| |||||  |||||||||||||   ||| ||||||||| |||||||||    
T  26451601 atgaataatagatgagagagcttctgccaga--tttgtagcagaagatcctcggcagttaactaccgaggttttcctcggcagttaact 26451515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 41858073 - 41858135
Alignment:
Q  14 agatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaact 78  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||  ||| |||||||||    
T  41858073 agatgaataatggatgagagagcttctgccaga--tttgtagcagaagatcctcgacagttaact 41858135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 3395991 - 3395926
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactg 79  Q
    |||||||||||||||||||||||| |||||||  || ||||||||| |||||  ||||||||||||||    
T  3395991 tgagatgaataatggatgagagagtttctgcc--atatttgtagcagaagatcctcggcagttaactg 3395926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 22547568 - 22547531
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  22547568 tgagatgaataattgatgagagagcttctgccagattt 22547531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 16940276 - 16940319
Alignment:
Q  66 tcggcagttaactgttgagattttcctcgacagttaactgcaac 109  Q
    ||||||||||||||  || |||||||||||||||||||||||||    
T  16940276 tcggcagttaactgccgaaattttcctcgacagttaactgcaac 16940319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 42602583 - 42602492
Alignment:
Q  14 agatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    ||||||||||||||||||| | ||| || |||||||  ||| || |||||  |||||||||||||   ||| ||||||||| ||||||||||||    
T  42602583 agatgaataatggatgagacaacttatgtcagattt--gtatcagaagatcctcggcagttaactaccgaggttttcctcggcagttaactgca 42602492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 39583355 - 39583432
Alignment:
Q  128 gcagttaactgccgagaaatatttggataaattacttgtgtttttcaaccttttcagatgtgtcgacaacaattttct 205  Q
    ||||||||||| |||   ||||||| |||| ||||| || ||| |||||||||||| ||||||| |||||| ||||||    
T  39583355 gcagttaactgtcgatggatatttgaataatttactcgtatttctcaaccttttcatatgtgtcaacaacagttttct 39583432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 42731840 - 42731800
Alignment:
Q  130 agttaactgccgagaaatatttggataaattacttgtgttt 170  Q
    ||||||||||||| | ||||||| |||||||||||||||||    
T  42731840 agttaactgccgaaagatatttgaataaattacttgtgttt 42731800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 66 - 201
Target Start/End: Original strand, 6562867 - 6563002
Alignment:
Q  66 tcggcagttaactgttgagattttcctcgacagttaactgcaactgattttgaagaaactccgcagttaactgccgagaaatatttggataaattacttg 165  Q
    ||||||||||||||| ||| ||||| |||  ||||||||||| | | |||||||    ||| ||||||||||||||||  |||||||||||| |||| ||    
T  6562867 tcggcagttaactgtcgaggttttcttcggtagttaactgcagccggttttgaaccgtctcggcagttaactgccgagggatatttggataatttacatg 6562966  T
Q  166 tgtttttcaaccttttcagatgtgtcgacaacaatt 201  Q
    |||||||||||| | ||| ||||||| ||| |||||    
T  6562967 tgtttttcaaccctatcaaatgtgtcaacagcaatt 6563002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 24364680 - 24364862
Alignment:
Q  19 aataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgcaactgattttga 118  Q
    ||||||||||| |||||||||||||||||||  ||||||  ||   |||||||||||||||| ||| ||||||||   ||||||||||||| |||||| |    
T  24364680 aataatggatgtgagagcttctgccagattt--gtagcaagagcgcatcggcagttaactgtcgaggttttcctcagtagttaactgcaaccgattttaa 24364777  T
Q  119 agaaactccgcagttaactgccgagaaatatttggataaattacttgtgtttttcaaccttttcagatgtgtcgacaacaattttc 204  Q
    |    ||| |||||||||||||||  || ||||   ||  |||| |||| |||||| |||| ||| ||||||||||||||||||||    
T  24364778 acctcctcggcagttaactgccgaagaacattttagtattttacatgtg-ttttcagccttctcaaatgtgtcgacaacaattttc 24364862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 13147621 - 13147528
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||||||| || | ||||||||  |||||| ||||| |||| ||||||||||| ||| |||||||||  |||||||||||    
T  13147621 tgagatgaataatggatgagagagtttttaccagattt--gtagcagaagatcatcgacagttaactgtcgaggttttcctcggtagttaactgca 13147528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 14174859 - 14174924
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactg 79  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| |||||  ||||||||||||||    
T  14174859 tgagatgaataatggatgagagagcttctgccagatttt--tagcagaagatcctcggcagttaactg 14174924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 27487614 - 27487679
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactg 79  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| |||||  ||||||||||||||    
T  27487614 tgagatgaataatggatgagagagcttctgccaga--tttgtagcagaagatcctcggcagttaactg 27487679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 29763167 - 29763231
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaact 78  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| |||||  |||||||||||||    
T  29763167 tgagatgaataatggatgagagagcttctgccaga--tttgtagcagaagatcctcggcagttaact 29763231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 42572705 - 42572769
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaact 78  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| |||||  |||||||||||||    
T  42572705 tgagatgaataatggatgagagagcttctgccaga--tttgtagcagaagatcctcggcagttaact 42572769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 29709259 - 29709364
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgcaactg 111  Q
    ||||||||||||||||||| ||||||||||| |||  ||| ||||| |||||  | | ||||||||| |||||||||| |||  |||||||||||||| |    
T  29709259 tgagatgaataatggatgaaagagcttctgctaga--tttatagcaaaagatctttgacagttaactattgagatttttctcatcagttaactgcaacag 29709356  T
Q  112 attttgaa 119  Q
     |||||||    
T  29709357 tttttgaa 29709364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 26637204 - 26637241
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26637204 tgagatgaataatggatgagagagcttctgccagattt 26637241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 49927451 - 49927513
Alignment:
Q  14 agatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaact 78  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||  |||| ||||||||    
T  49927451 agatgaataatggatgagagagcttctgccaga--tttgtagcagaagatcctcggtagttaact 49927513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 13972187 - 13972150
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  13972187 tgagatgaataatagatgagagagcttctgccagattt 13972150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 41779804 - 41779767
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  41779804 tgagatgaataatggatgagagagcttctgctagattt 41779767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 44596960 - 44596895
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactg 79  Q
    |||||||||||||||||||||||| |||||||| |  ||||||||| |||||  || |||||||||||    
T  44596960 tgagatgaataatggatgagagagtttctgccaaa--tttgtagcagaagatactcagcagttaactg 44596895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 6434873 - 6434809
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaact 78  Q
    |||||||||||||||||||||| |||||| |||||  ||||||||| |||||  | |||||||||||    
T  6434873 tgagatgaataatggatgagagtgcttctaccaga--tttgtagcagaagatccttggcagttaact 6434809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 35526983 - 35527036
Alignment:
Q  12 tgagatgaataatggatgag--agagcttctgccagatttttgtagcataagat 63  Q
    ||||||||||||||||||||  |||| |||||||| |||||||||||| |||||    
T  35526983 tgagatgaataatggatgagatagaggttctgccatatttttgtagcagaagat 35527036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 49426813 - 49426750
Alignment:
Q  12 tgagatgaataatggatgaga-gagcttctgccagatttttgtagcataagattatcggcagttaa 76  Q
    ||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||  |||||||||||    
T  49426813 tgagatgaataatggatgagaggagattctgccaga--tttgtagcagaagatcctcggcagttaa 49426750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 19159750 - 19159655
Alignment:
Q  14 agatgaataatggatgaga-gagcttctgccagatttttgta--gcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    ||||||||||||||||||| ||| |||||||||| |||||||  ||| |||||  |||||||||||||   ||| ||||||| | ||||||||||||    
T  19159750 agatgaataatggatgagaggagattctgccaga-ttttgtagcgcagaagatcctcggcagttaactaccgaggttttccttggcagttaactgca 19159655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 29435097 - 29435060
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  29435097 tgagatgaataatggatgagagaacttctgccaaattt 29435060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 49395714 - 49395664
Alignment:
Q  26 gatgagagagcttctgccagatttttgtagcataagattatcggcagttaact 78  Q
    |||||||||||||||||||||  ||||||||| |||||  |||||||||||||    
T  49395714 gatgagagagcttctgccaga--tttgtagcagaagatcctcggcagttaact 49395664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 49502881 - 49502957
Alignment:
Q  128 gcagttaactgccgagaaatatttggataaattacttgtgtttttcaaccttttcagatgtgtcgacaacaattttc 204  Q
    |||||||| |||||||| | |||||| ||||||||| |||||| ||| ||  | || ||||||| ||||||||||||    
T  49502881 gcagttaattgccgagagacatttgggtaaattactcgtgtttctcagccaatgcatatgtgtcaacaacaattttc 49502957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 2648242 - 2648152
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaact 104  Q
    ||||||||||||| |||||||||| ||||||||||  ||||||||| ||||| ||||||| ||||||   ||||||||||||| |||||||||    
T  2648242 tgagatgaataattgatgagagagtttctgccaga--tttgtagcagaagatcatcggcaattaactaccgagattttcctcggcagttaact 2648152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 43491234 - 43491141
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||||||||||||||||||  ||| || || |||||| |||||||||||||    || ||||||||||||||||| ||||    
T  43491234 tgagatgaataatggatgagagagcttctgccaga--tttataacagaagattctcggcagttaactaccaaggttttcctcgacagttaattgca 43491141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 2920464 - 2920528
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaact 78  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| |||||  |||||||||||||    
T  2920464 tgagatgaataatggatgagagagcttctgccaga--tttgtagcagaagatcctcggcagttaact 2920528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 24512292 - 24512228
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaact 78  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| |||||  |||||||||||||    
T  24512292 tgagatgaataatggatgagagagcttctgccaga--tttgtagcagaagatcctcggcagttaact 24512228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 41500184 - 41500275
Alignment:
Q  14 agatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    ||||||||||||||||||||||||| |||||||  ||||||||| |||||  |||||||||||||   ||| |||| |||| ||||||||||||    
T  41500184 agatgaataatggatgagagagcttatgccaga--tttgtagcagaagatcctcggcagttaactaccgaggtttttctcggcagttaactgca 41500275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 29093779 - 29093869
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||   ||||||||||||||||||||||  |||||| |||||  ||||||||||||||   || ||||||||| || |||||||||    
T  29093779 tgagatgaataat---tgagagagcttctgccagattt--gtagcagaagatcctcggcagttaactgccaaggttttcctcggcaattaactgca 29093869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 40679545 - 40679608
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaac 77  Q
    |||||||||||||||||||||||| |||| |||||  ||||||||| |||||  ||||||||||||    
T  40679545 tgagatgaataatggatgagagaggttcttccaga--tttgtagcagaagatcctcggcagttaac 40679608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 39393162 - 39393072
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaact 104  Q
    |||||||||||||||||||||||||||||  ||||  ||||||| | |||||  ||| |||||||||   ||| |||| ||||||||||||||    
T  39393162 tgagatgaataatggatgagagagcttctatcaga--tttgtagtagaagatcctcgacagttaactaccgaggtttttctcgacagttaact 39393072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 29905468 - 29905396
Alignment:
Q  132 ttaactgccgagaaatatttggataaattacttgtgtttttcaaccttttcagatgtgtcgacaacaattttc 204  Q
    |||||||||||| || |||||||||||||||| |||||| ||| ||  | || ||||||| ||||||||||||    
T  29905468 ttaactgccgaggaagatttggataaattactcgtgtttctcagccaatgcatatgtgtcaacaacaattttc 29905396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 10365746 - 10365830
Alignment:
Q  18 gaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaact 104  Q
    ||||||||||||||||||||| |||||||  ||||||||| |||||  |||||| ||||||    || ||||||||| |||||||||    
T  10365746 gaataatggatgagagagcttatgccaga--tttgtagcaaaagatcctcggcatttaactaccaaggttttcctcggcagttaact 10365830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 16580611 - 16580574
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  16580611 tgagatgaataatggatgagagaacttttgccagattt 16580574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 2271737 - 2271785
Alignment:
Q  66 tcggcagttaactgttgagattttcctcgacagttaactgcaactgatt 114  Q
    ||||||||||||||  ||  |||||||||||||||||||||| ||||||    
T  2271737 tcggcagttaactgccgaagttttcctcgacagttaactgcagctgatt 2271785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 34638262 - 34638234
Alignment:
Q  12 tgagatgaataatggatgagagagcttct 40  Q
    |||||||||||||||||||||||||||||    
T  34638262 tgagatgaataatggatgagagagcttct 34638234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 18847 - 19037
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgcaa-ct 110  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||| |||||  ||| |||||||||   |||     ||||| ||||||||||||| ||    
T  18847 tgagatgaataatggatgagaaagcttctgccaga--tttgtagcagaagatcctcgacagttaactaccgaggaaagcctcggcagttaactgcaacct 18944  T
Q  111 gattttgaagaaactccgcagttaactgccgagaaatatttggataaattacttgtgtttttcaaccttttcagatgtgtcgacaacaattttc 204  Q
    | || |  | ||| || | |||||||||||||||  ||||| | ||||||||| |||||| ||| ||||| || ||||||| ||||||||||||    
T  18945 gtttcttca-aaattcggtagttaactgccgagaggtatttaggtaaattactggtgtttctcagcctttgcatatgtgtcaacaacaattttc 19037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 12335 - 12429
Alignment:
Q  12 tgagatgaataatggatgagag-agcttctgccagatttttgtagcataagattatcggcagttaactgttgagattttcctcgacagttaactgca 107  Q
    |||||||||||||||||||||| || |||||||||||||  |||||| |||||  |||||||||||||   ||| ||||| ||| ||||||||||||    
T  12335 tgagatgaataatggatgagagtagattctgccagattt--gtagcagaagatcctcggcagttaactaccgaggttttcatcggcagttaactgca 12429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 921 - 884
Alignment:
Q  12 tgagatgaataatggatgagagagcttctgccagattt 49  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  921 tgagatgaataatggataagagagcttctgccagattt 884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University