View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16383_low_6 (Length: 361)
Name: NF16383_low_6
Description: NF16383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16383_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 42770994 - 42770659
Alignment:
| Q |
19 |
aaacgtcactgacgccgagaagagtaactcattcattgaagaagagttcaggttccaagtttgtcaagttaccgaatccgagaaattctgagtcagaaga |
118 |
Q |
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| T |
42770994 |
aaacgtcactgacaccgagaagagtaactcattctttgaagaagagttcaggttccaagtttgtcaagttaccgaatccgagaaattctgagtcagaaga |
42770895 |
T |
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| Q |
119 |
agaagatagagnnnnnnngttgaagtgaaggggaagagtaaaaaaggttatacagctgaaggtgagaaagtcgaagaagaacattcaagaagcttatgtg |
218 |
Q |
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| T |
42770894 |
agaagatagagaaaaaaagttgaagtgaaggggaaaagtaaaaaaggttatacagctgaaggtgagaaagtcgaagaagaacattcaagaaacttatgtg |
42770795 |
T |
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| Q |
219 |
gctgaaggtgaaatctcttagaatgtttcacaagattttgtggttgaaggtgagaaagcggagaagaaagctctaagaatgttaaataaggtatggctaa |
318 |
Q |
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| T |
42770794 |
gctgaaggtgaaatctcttagaatgtttcacaagattttgtggttgaaggtgagaaagcggagaagaaagctctaagaatgttaaataaggtatggctga |
42770695 |
T |
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| Q |
319 |
aagtgaaatctttgaggcggttccac-aggttctgc |
353 |
Q |
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| T |
42770694 |
aagtgaaatctttgaggcggttccacaaggttctgc |
42770659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 202 - 310
Target Start/End: Original strand, 42770110 - 42770219
Alignment:
| Q |
202 |
ttcaagaagcttatgtggctgaaggtgaaatctcttagaatgtttcacaagattttgtggttgaaggtgagaaagcgg-agaagaaagctctaagaatgt |
300 |
Q |
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| T |
42770110 |
ttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaaggttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgt |
42770209 |
T |
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| Q |
301 |
taaataaggt |
310 |
Q |
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| T |
42770210 |
tcaagaaggt |
42770219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 42773014 - 42772977
Alignment:
| Q |
195 |
aagaacattcaagaagcttatgtggctgaaggtgaaat |
232 |
Q |
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| T |
42773014 |
aagaacattcaagaagcttttgtggctgaaggtgaaat |
42772977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 42772323 - 42772409
Alignment:
| Q |
261 |
gttgaaggtgagaaagcgga-gaagaaagctctaagaatgttaaataaggta---tggctaaaagtgaaatctttgaggcggttcca |
343 |
Q |
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| T |
42772323 |
gttgaaggtgggaaagcggaagaagaaaactctaagaacgttaaagaaggttccgtggctgaaggtgaaatctttgagacggttcca |
42772409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 42772425 - 42772480
Alignment:
| Q |
176 |
gaaggtgagaaagtcgaagaagaacattcaagaagcttatgtggctgaaggtgaaa |
231 |
Q |
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| T |
42772425 |
gaaggtgagaaagaggaagaagaaaactcaagaaggttctgtggctgaaggtgaaa |
42772480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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