View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16384_high_2 (Length: 417)

Name: NF16384_high_2
Description: NF16384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16384_high_2
NF16384_high_2
[»] chr3 (8 HSPs)
chr3 (10-252)||(6974348-6974591)
chr3 (10-401)||(41458480-41458843)
chr3 (272-387)||(6974621-6974741)
chr3 (278-401)||(48648247-48648370)
chr3 (276-401)||(30221982-30222107)
chr3 (278-401)||(51827381-51827503)
chr3 (286-401)||(11651343-11651457)
chr3 (358-401)||(11652203-11652246)
[»] chr8 (1 HSPs)
chr8 (10-401)||(531124-531484)
[»] chr2 (5 HSPs)
chr2 (10-324)||(8541850-8542156)
chr2 (276-401)||(34812055-34812179)
chr2 (339-403)||(8541793-8541857)
chr2 (331-401)||(9540972-9541042)
chr2 (339-391)||(20632856-20632908)
[»] chr4 (8 HSPs)
chr4 (278-401)||(24157944-24158067)
chr4 (276-401)||(31328846-31328971)
chr4 (286-390)||(5590926-5591029)
chr4 (286-390)||(48127341-48127444)
chr4 (347-401)||(53772851-53772905)
chr4 (347-391)||(12368610-12368654)
chr4 (358-401)||(5590137-5590180)
chr4 (358-401)||(48128190-48128233)
[»] chr6 (4 HSPs)
chr6 (279-401)||(33435383-33435505)
chr6 (331-401)||(10927159-10927229)
chr6 (366-401)||(33436247-33436282)
chr6 (341-401)||(13255062-13255122)
[»] chr1 (3 HSPs)
chr1 (276-401)||(25671910-25672033)
chr1 (286-401)||(50271678-50271792)
chr1 (347-391)||(26118726-26118770)
[»] chr7 (3 HSPs)
chr7 (278-401)||(31954181-31954302)
chr7 (286-401)||(31955112-31955226)
chr7 (358-401)||(31954327-31954370)
[»] chr5 (7 HSPs)
chr5 (286-401)||(41045427-41045541)
chr5 (276-401)||(22799644-22799768)
chr5 (286-401)||(19366460-19366574)
chr5 (286-389)||(31082638-31082740)
chr5 (330-401)||(31036081-31036152)
chr5 (358-402)||(31082029-31082073)
chr5 (358-401)||(41046290-41046333)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 6974348 - 6974591
Alignment:
Q  10 ataatacttgtaagggttgcaatcgatgacttaatcaagggatacaaaaatgtcgacaacaacgttgttgagaataaaataaattccagaaacaaagaac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6974348 ataatacttgtaagggttgcaatcgatgacttaatcaagggatacaaaaatgtcgacaacaacgttgttgagaataaaataaattccagaaacaaagaac 6974447  T
Q  110 --atgtatggtaggtaacacaacaatgttttcaaattaggctgatcgacttcttaaagaaaaaattttgactaattgattgaaaacnnnnnnngtgtgaa 207  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       |||||||    
T  6974448 atatgtatggtaggtaacacaacaatgttttcaaattaggctgatcgacttcttaaagaaaaaa-tttgactaattgattgaaaacaaaaaaagtgtgaa 6974546  T
Q  208 tggaacaacaaaaaggtatagaggtatgcttggaaatcacaaata 252  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  6974547 tggaacaacaaaaaggtacagaggtatgcttggaaatcacaaata 6974591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 10 - 401
Target Start/End: Original strand, 41458480 - 41458843
Alignment:
Q  10 ataatacttgtaagggttgcaatcgatgacttaatcaagggatacaaaaatgtcgacaacaacgttgttgagaataaaataaattccagaaacaaagaac 109  Q
    |||||||||| |||||||| ||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  41458480 ataatacttgcaagggttgtaatcgatgaattaatcatgggatacaaaaatgtcgacaacaatgttgttgagaataaaacaaattccagaaacaaagaac 41458579  T
Q  110 atgtatggtaggtaacacaacaatgttttcaaattaggctgatcgacttcttaaag-aaaaaattttgactaattgattgaa-aacnnnnnnngtgtgaa 207  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||    | ||||||||||||| ||        |||||||    
T  41458580 atgtatggtaggtaacacaacaatgtttgcaaattaggctgatcgatttcttgaagaaaaaaaaaaaggctaattgattgaagaaaaaaaaaagtgtgaa 41458679  T
Q  208 tggaacaacaaaaaggtatagaggtatgcttggaaatcacaaatacatnnnnnnnnnnnnnnnaaaccatgaaacaatttaggaaatgaaaatctcaaaa 307  Q
    || ||||||||||||||||||| |||||| | ||||||||||||||                 |||||||||||||||||||||||||||| ||||||||    
T  41458680 tgaaacaacaaaaaggtatagaagtatgcctcgaaatcacaaatac--------tgagagagaaaaccatgaaacaatttaggaaatgaaattctcaaaa 41458771  T
Q  308 agatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttggatcaaaagaaatcaacgattaagattt 401  Q
    ||||||||||||||||                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41458772 agatatactacatgat----------------------attttaaatgaataaatataagcctttggatcaaaagaaatcaacgattaagattt 41458843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 6974621 - 6974741
Alignment:
Q  272 aaccatgaaacaatttaggaaatgaaaatctcaaaaaga-----tatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataa 366  Q
    |||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6974621 aaccatgaaacaatttaggaaatgaaaatctcaaaaagacatactatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataa 6974720  T
Q  367 gcctttggatcaaaagaaatc 387  Q
    |||||||||||||||||||||    
T  6974721 gcctttggatcaaaagaaatc 6974741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 278 - 401
Target Start/End: Complemental strand, 48648370 - 48648247
Alignment:
Q  278 gaaacaatttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttggatc 377  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||   |||||||||| |||||||||| |||||||| |||||||||||||| |||     
T  48648370 gaaacaaattaggaaatgaaaatcgcaaaaagatatactacatgatagtcttaagtggttcacatgatattctaaatgaacaaatataagcctttagata 48648271  T
Q  378 aaaagaaatcaacgattaagattt 401  Q
    |||||||||||||| |||||||||    
T  48648270 aaaagaaatcaacggttaagattt 48648247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 276 - 401
Target Start/End: Original strand, 30221982 - 30222107
Alignment:
Q  276 atgaaacaatttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttgga 375  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||| ||||  ||| |||||| ||||||||||||||||||| |||||||||||||  ||    
T  30221982 atgaaacaaattaggaaatgaaaatcataaaaagatatactacattatactcttaggtggtttacatgatattttaaatgaacaaatataagccttcaga 30222081  T
Q  376 tcaaaagaaatcaacgattaagattt 401  Q
    | |||||||||||||| |||| ||||    
T  30222082 ttaaaagaaatcaacgcttaaaattt 30222107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 278 - 401
Target Start/End: Original strand, 51827381 - 51827503
Alignment:
Q  278 gaaacaatttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttggatc 377  Q
    ||||||| |||||||||||||||| |||||||||||||||||| ||||  |||||||||| | |||||||| |||||||| ||||||||| |||| |||     
T  51827381 gaaacaaattaggaaatgaaaatcgcaaaaagatatactacat-atactcttaagtggttcatatgatattctaaatgaacaaatataagtctttagata 51827479  T
Q  378 aaaagaaatcaacgattaagattt 401  Q
    |||||||||||||| |||||||||    
T  51827480 aaaagaaatcaacggttaagattt 51827503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 286 - 401
Target Start/End: Complemental strand, 11651457 - 11651343
Alignment:
Q  286 ttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttggatcaaaagaaa 385  Q
    |||||||||||||||| ||||||||||| |||||| ||||  ||| |||||| |||| ||||| | ||||||||||||||||||||| ||||||||||||    
T  11651457 ttaggaaatgaaaatcgcaaaaagatattctacat-atactcttacgtggttcacattatattcttaatgaataaatataagcctttagatcaaaagaaa 11651359  T
Q  386 tcaacgattaagattt 401  Q
    |||||  |||||||||    
T  11651358 tcaacagttaagattt 11651343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 401
Target Start/End: Original strand, 11652203 - 11652246
Alignment:
Q  358 taaatataagcctttggatcaaaagaaatcaacgattaagattt 401  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||    
T  11652203 taaatattagcctttggatcaaatgaaatcaacgattaagattt 11652246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 10 - 401
Target Start/End: Original strand, 531124 - 531484
Alignment:
Q  10 ataatacttgtaagggttgcaatcgatgacttaatcaagggatacaaaaatgtcgacaacaacgttgttgagaataaaataaattccagaaacaaagaac 109  Q
    |||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  531124 ataatacttgcaaaggttgcaatcgatgaattaatcaagggatacaaaaatgtcgacaacaacgttgttgagaataaaataaattctagaaacaaagaat 531223  T
Q  110 atgtatggtaggtaacacaacaatgttttcaaattaggctgatcgacttcttaaagaaaaaattttgactaattgattgaaaacnnnnnnngtgtgaatg 209  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||    | ||||||||||||||||       |||||||||    
T  531224 atgtatggtaggtaacacaacaatgttttcaaattaggctaatcgatttcttaaaaaaaaaaaaagg-ctaattgattgaaaacaaaaaaagtgtgaatg 531322  T
Q  210 gaacaacaaaaaggtatagaggtatgcttggaaatcacaaatacatnnnnnnnnnnnnnnnaaaccatgaaacaatttaggaaatgaaaatctcaaaaag 309  Q
    ||||||||||||| |||||| |||||| |||||||||||||| ||                |||||||||||||||||||||||||||||||||||||||    
T  531323 gaacaacaaaaagatatagaagtatgcctggaaatcacaaatgca--------gagagagaaaaccatgaaacaatttaggaaatgaaaatctcaaaaag 531414  T
Q  310 atatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttggatcaaaagaaatcaacgattaagattt 401  Q
    ||||||||||||||                      |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  531415 atatactacatgat----------------------attttaaatgaataaatataagcctttggatcaaaagaaatccacgattaagattt 531484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 10 - 324
Target Start/End: Complemental strand, 8542156 - 8541850
Alignment:
Q  10 ataatacttgtaagggttgcaatcgatgacttaatcaagggatacaaaaatgtcgacaacaacgttgttgagaataaaataaattccagaaacaaagaac 109  Q
    |||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8542156 ataatacttgcaagggttgtaatcgatgaattaatcaagggatacaaaaatgtcgacaacaacgttgttgagaataaaacaaattccagaaacaaagaac 8542057  T
Q  110 atgtatggtaggtaacacaacaatgttttcaaattaggctgatcgacttcttaaagaaaaaattttgactaattgattgaaaacnnnnnnngtgtgaatg 209  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||    | ||||||||||||||||       |||||||||    
T  8542056 atgtatggtaagtaacacaacaatgttttcaaattaggctgatcgatttcttgaagaaaaaaaaaaggctaattgattgaaaacaaaaaaagtgtgaatg 8541957  T
Q  210 gaacaacaaaaaggtatagaggtatgcttggaaatcacaaatacatnnnnnnnnnnnnnnnaaaccatgaaacaatttaggaaatgaaaatctcaaaaag 309  Q
    |||||||||||||||||||| ||| || |  |||||| |||||||                |||||||||||||||||||||||||||| ||||||||||    
T  8541956 gaacaacaaaaaggtatagaagtacgcctcaaaatcataaataca--------gagagagaaaaccatgaaacaatttaggaaatgaaattctcaaaaag 8541865  T
Q  310 atatactacatgata 324  Q
    |||||| ||||||||    
T  8541864 atatacgacatgata 8541850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 276 - 401
Target Start/End: Complemental strand, 34812179 - 34812055
Alignment:
Q  276 atgaaacaatttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttgga 375  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||| ||||  |||||||||| |||||||| |||||||||| |||||||| ||||  ||    
T  34812179 atgaaacaaattaggaaatgaaaatcataaaaagatatactacattatactcttaagtggttcacatgata-tttaaatgaacaaatataaaccttcaga 34812081  T
Q  376 tcaaaagaaatcaacgattaagattt 401  Q
    | |||||||||||| | |||||||||    
T  34812080 ttaaaagaaatcaaagcttaagattt 34812055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 339 - 403
Target Start/End: Complemental strand, 8541857 - 8541793
Alignment:
Q  339 acatgatattttaaatgaataaatataagcctttggatcaaaagaaatcaacgattaagattttg 403  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  8541857 acatgatattttaaatgaataaatataagtttttggatcaaaagaaatcaacgattaagattttg 8541793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 401
Target Start/End: Original strand, 9540972 - 9541042
Alignment:
Q  331 agtggttaacatgatattttaaatgaataaatataagcctttggatcaaaagaaatcaacgattaagattt 401  Q
    ||||||| |||||||||| |||||||| ||||||||||| | ||||||||||| |||||||  ||||||||    
T  9540972 agtggttcacatgatattctaaatgaacaaatataagccatcggatcaaaagatatcaacggctaagattt 9541042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 20632856 - 20632908
Alignment:
Q  339 acatgatattttaaatgaataaatataagcctttggatcaaaagaaatcaacg 391  Q
    |||||||||||||| |||| |||||||| ||||| ||||||| ||||||||||    
T  20632856 acatgatattttaattgaacaaatataaacctttagatcaaacgaaatcaacg 20632908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 278 - 401
Target Start/End: Complemental strand, 24158067 - 24157944
Alignment:
Q  278 gaaacaatttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttggatc 377  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||  |||||||||| |||||||||| |||||||| |||||||||||||| |||     
T  24158067 gaaacaaattaggaaatgaaaatcgcaaaaagatatactacatgatactcttaagtggttcacatgatattctaaatgaacaaatataagcctttagata 24157968  T
Q  378 aaaagaaatcaacgattaagattt 401  Q
    |||||||||||||| |||||||||    
T  24157967 aaaagaaatcaacggttaagattt 24157944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 276 - 401
Target Start/End: Complemental strand, 31328971 - 31328846
Alignment:
Q  276 atgaaacaatttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttgga 375  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||| ||||  ||| ||| || ||||||||||||||||||| |||||||||||||  ||    
T  31328971 atgaaacaaattaggaaatgaaaatcataaaaagatatactacattatactcttaggtgatttacatgatattttaaatgaacaaatataagccttcaga 31328872  T
Q  376 tcaaaagaaatcaacgattaagattt 401  Q
    | |||||||||||||| |||| ||||    
T  31328871 ttaaaagaaatcaacgtttaaaattt 31328846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 390
Target Start/End: Original strand, 5590926 - 5591029
Alignment:
Q  286 ttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttggatcaaaagaaa 385  Q
    |||||||||||||||| ||||||||||| |||||| ||||  ||| |||||| |||| ||||| | ||||||||||||||||| ||| ||||||||||||    
T  5590926 ttaggaaatgaaaatcgcaaaaagatattctacat-atactcttatgtggttcacattatattcttaatgaataaatataagcatttagatcaaaagaaa 5591024  T
Q  386 tcaac 390  Q
    |||||    
T  5591025 tcaac 5591029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 390
Target Start/End: Complemental strand, 48127444 - 48127341
Alignment:
Q  286 ttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttggatcaaaagaaa 385  Q
    |||||||||||||||| ||||||||||| |||||| ||||  ||| |||||| |||| ||||| | ||||||||||||||||| ||| ||||||||||||    
T  48127444 ttaggaaatgaaaatcgcaaaaagatattctacat-atactcttatgtggttcacattatattcttaatgaataaatataagcatttagatcaaaagaaa 48127346  T
Q  386 tcaac 390  Q
    |||||    
T  48127345 tcaac 48127341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 53772905 - 53772851
Alignment:
Q  347 ttttaaatgaataaatataagcctttggatcaaaagaaatcaacgattaagattt 401  Q
    ||||||||||| ||| | |||||||||||||||||||||||||||||||| ||||    
T  53772905 ttttaaatgaacaaacaaaagcctttggatcaaaagaaatcaacgattaatattt 53772851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 12368610 - 12368654
Alignment:
Q  347 ttttaaatgaataaatataagcctttggatcaaaagaaatcaacg 391  Q
    ||||||||||| ||| | |||||||||||||||||||||||||||    
T  12368610 ttttaaatgaacaaacaaaagcctttggatcaaaagaaatcaacg 12368654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 401
Target Start/End: Complemental strand, 5590180 - 5590137
Alignment:
Q  358 taaatataagcctttggatcaaaagaaatcaacgattaagattt 401  Q
    ||||||| ||||||||||||||| ||||||||||||||| ||||    
T  5590180 taaatattagcctttggatcaaatgaaatcaacgattaaaattt 5590137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 401
Target Start/End: Original strand, 48128190 - 48128233
Alignment:
Q  358 taaatataagcctttggatcaaaagaaatcaacgattaagattt 401  Q
    ||||||| ||||||||||||||| ||||||||||||||| ||||    
T  48128190 taaatattagcctttggatcaaatgaaatcaacgattaaaattt 48128233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 279 - 401
Target Start/End: Complemental strand, 33435505 - 33435383
Alignment:
Q  279 aaacaatttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttggatca 378  Q
    |||||| |||||||||||||||| |||||||||||||||||| ||||  |||||||||| |||||||||| ||||||||||||||||||||||| ||| |    
T  33435505 aaacaaattaggaaatgaaaatcgcaaaaagatatactacataatactcttaagtggttcacatgatattctaaatgaataaatataagcctttagataa 33435406  T
Q  379 aaagaaatcaacgattaagattt 401  Q
    ||||||||||||  |||||||||    
T  33435405 aaagaaatcaacagttaagattt 33435383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 401
Target Start/End: Original strand, 10927159 - 10927229
Alignment:
Q  331 agtggttaacatgatattttaaatgaataaatataagcctttggatcaaaagaaatcaacgattaagattt 401  Q
    ||||||| |||||| |||||||||||  |||||| |||||| ||||||||||||||||||  |||||||||    
T  10927159 agtggttcacatgagattttaaatgagcaaatattagccttcggatcaaaagaaatcaacagttaagattt 10927229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 366 - 401
Target Start/End: Original strand, 33436247 - 33436282
Alignment:
Q  366 agcctttggatcaaaagaaatcaacgattaagattt 401  Q
    ||||||||||||||| ||||||||||||||||||||    
T  33436247 agcctttggatcaaatgaaatcaacgattaagattt 33436282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 13255122 - 13255062
Alignment:
Q  341 atgatattttaaatgaataaatataagcctttggatcaaaagaaatcaacgattaagattt 401  Q
    ||||| ||||||||||  ||||||||| |||  |||||||||||||||||| |||| ||||    
T  13255122 atgattttttaaatgagcaaatataagtcttcagatcaaaagaaatcaacggttaaaattt 13255062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 276 - 401
Target Start/End: Original strand, 25671910 - 25672033
Alignment:
Q  276 atgaaacaatttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttgga 375  Q
    ||||||||| ||||||||||||||||  |||||| |||| |||||  |||  ||| |||||| |||||||||||||||||||||||||||||||||  ||    
T  25671910 atgaaacaaattaggaaatgaaaatcataaaaaggtatagtacat--tactcttatgtggttcacatgatattttaaatgaataaatataagccttcaga 25672007  T
Q  376 tcaaaagaaatcaacgattaagattt 401  Q
    | |||||||||||||| |||||||||    
T  25672008 tgaaaagaaatcaacgcttaagattt 25672033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 401
Target Start/End: Original strand, 50271678 - 50271792
Alignment:
Q  286 ttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttggatcaaaagaaa 385  Q
    |||||||||||||||  ||||| ||||| |||||| ||||  ||| |||||| |||| ||||| | ||||||||||||||||||||| ||||||||||||    
T  50271678 ttaggaaatgaaaattgcaaaatgatattctacat-atactcttatgtggttcacattatattcttaatgaataaatataagcctttagatcaaaagaaa 50271776  T
Q  386 tcaacgattaagattt 401  Q
    |||||  |||||||||    
T  50271777 tcaacagttaagattt 50271792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 26118770 - 26118726
Alignment:
Q  347 ttttaaatgaataaatataagcctttggatcaaaagaaatcaacg 391  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||||    
T  26118770 ttttaaatgaacaaataaaagcctttagatcaaaagaaatcaacg 26118726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 278 - 401
Target Start/End: Original strand, 31954181 - 31954302
Alignment:
Q  278 gaaacaatttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttggatc 377  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||  ||  |||||| |||||||||| ||||| || |||| |||||||||  ||     
T  31954181 gaaacaaattaggaaatgaaaatcgcaaaaagatatactacatgatactctt--gtggttcacatgatattctaaatcaacaaatgtaagcctttaaata 31954278  T
Q  378 aaaagaaatcaacgattaagattt 401  Q
    |||||||||||||| |||||||||    
T  31954279 aaaagaaatcaacggttaagattt 31954302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 286 - 401
Target Start/End: Original strand, 31955112 - 31955226
Alignment:
Q  286 ttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttggatcaaaagaaa 385  Q
    |||||||||||||||| ||||||||||| |||||| ||||  ||| |||||| |||| ||||| | ||||||||||||||||| ||| ||||||||||||    
T  31955112 ttaggaaatgaaaatcgcaaaaagatattctacat-atactcttatgtggttcacattatattcttaatgaataaatataagcttttagatcaaaagaaa 31955210  T
Q  386 tcaacgattaagattt 401  Q
    |||||  |||||||||    
T  31955211 tcaacagttaagattt 31955226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 401
Target Start/End: Complemental strand, 31954370 - 31954327
Alignment:
Q  358 taaatataagcctttggatcaaaagaaatcaacgattaagattt 401  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||    
T  31954370 taaatattagcctttggatcaaatgaaatcaacgattaagattt 31954327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 286 - 401
Target Start/End: Complemental strand, 41045541 - 41045427
Alignment:
Q  286 ttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttggatcaaaagaaa 385  Q
    |||||||||||||||| ||||||||||| |||||| ||||  ||| |||||| |||| ||||| | ||||||||||||||||||||| ||||||||||||    
T  41045541 ttaggaaatgaaaatcgcaaaaagatattctacat-atactcttatgtggttcacattatattcttaatgaataaatataagcctttagatcaaaagaaa 41045443  T
Q  386 tcaacgattaagattt 401  Q
    |||||  |||||||||    
T  41045442 tcaacagttaagattt 41045427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 276 - 401
Target Start/End: Original strand, 22799644 - 22799768
Alignment:
Q  276 atgaaacaatttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttgga 375  Q
    |||||| || |||||||||||||||| ||||||||||| |||||| ||||  ||| |||||| |||| ||||| | |||||||||||||||| |||| ||    
T  22799644 atgaaataaattaggaaatgaaaatcgcaaaaagatattctacat-atactcttatgtggttcacattatattcttaatgaataaatataagtctttaga 22799742  T
Q  376 tcaaaagaaatcaacgattaagattt 401  Q
    |||||||||||||||  |||||||||    
T  22799743 tcaaaagaaatcaacagttaagattt 22799768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 401
Target Start/End: Original strand, 19366460 - 19366574
Alignment:
Q  286 ttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttggatcaaaagaaa 385  Q
    |||||||||||||||| ||||||||||| |||||| ||||  ||| |||||| |||| ||||| | |||||||||| |||||||||| ||||||||||||    
T  19366460 ttaggaaatgaaaatcgcaaaaagatattctacat-atactcttatgtggttcacattatattcttaatgaataaacataagcctttagatcaaaagaaa 19366558  T
Q  386 tcaacgattaagattt 401  Q
    ||| |  |||||||||    
T  19366559 tcagcagttaagattt 19366574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 286 - 389
Target Start/End: Original strand, 31082638 - 31082740
Alignment:
Q  286 ttaggaaatgaaaatctcaaaaagatatactacatgatacgtttaagtggttaacatgatattttaaatgaataaatataagcctttggatcaaaagaaa 385  Q
    |||||||||||||||| ||||||||||| |||||| | ||  ||| |||||| |||| ||||| | |||||||||||||||||| || ||||||||||||    
T  31082638 ttaggaaatgaaaatcgcaaaaagatattctacat-acactcttatgtggttcacattatattcttaatgaataaatataagcccttagatcaaaagaaa 31082736  T
Q  386 tcaa 389  Q
    ||||    
T  31082737 tcaa 31082740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 31036081 - 31036152
Alignment:
Q  330 aagtggttaacatgatattttaaatgaataaatataagcctttggatcaaaagaaatcaacgattaagattt 401  Q
    |||||||| |||| ||||| ||||| || ||||||||||||||  |||||||||||||||||||||||||||    
T  31036081 aagtggttcacatcatattctaaatcaacaaatataagcctttatatcaaaagaaatcaacgattaagattt 31036152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 31082073 - 31082029
Alignment:
Q  358 taaatataagcctttggatcaaaagaaatcaacgattaagatttt 402  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||    
T  31082073 taaatattagcctttggatcaaatgaaatcaacgattaagatttt 31082029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 401
Target Start/End: Original strand, 41046290 - 41046333
Alignment:
Q  358 taaatataagcctttggatcaaaagaaatcaacgattaagattt 401  Q
    ||||||| |||||||| |||||| ||||||||||||||||||||    
T  41046290 taaatattagcctttgtatcaaatgaaatcaacgattaagattt 41046333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University