View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16384_low_1 (Length: 689)
Name: NF16384_low_1
Description: NF16384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16384_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 2e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 436 - 675
Target Start/End: Complemental strand, 2713365 - 2713129
Alignment:
| Q |
436 |
gcacatgtaaaagtttcctcttgttgtaattggtttcaggccatgatcgactgtcaccctttgtggaaatgattggtcttaaaattttggtttagctgaa |
535 |
Q |
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| T |
2713365 |
gcacatgtaaaagtttcctcttgttgtaattggtttcaggccatgatcgactgtcaccctttgtggaaatgattggtcttaaaattttggttcagctcaa |
2713266 |
T |
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| Q |
536 |
gtcacttggtccaaatcaatttgtaaggtgattgccgtctacaattatatatacataattatattttattcaatgtatgacttttaacatttggattaga |
635 |
Q |
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| T |
2713265 |
ctcacttgatccaaatcgatttgtaaggtgatgaccatctacaa-tatatatatata--tatttattattcaatgtataatttttaacatttgaattaga |
2713169 |
T |
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| Q |
636 |
catctaaaacttgatctgagtaatttgataactgtgactt |
675 |
Q |
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| T |
2713168 |
catctaaaacttgatctgagtaatttaataactgtgactt |
2713129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 2713771 - 2713599
Alignment:
| Q |
18 |
actatacattacagctgtgcatggaaactcatccatcacacaacctttacaatgttataaaatcagatgaaaatctaacaaactatatataatgaaataa |
117 |
Q |
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| T |
2713771 |
actatacattacagctgtgcatggaaactcatccatcacacaacctttacaatattataaaatcagatgaaaatctaacaaac----tataatgaaataa |
2713676 |
T |
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| Q |
118 |
ttttacaaaatatcataaaagaatatctaaagaatttaattagcatattctgattttacgcatatatctaatgatgt |
194 |
Q |
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| T |
2713675 |
ttttaaaaaatatcataaaagaatatctaaagaatttaattagtatattctgattttgcgcatatatctaatgatgt |
2713599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 274 - 386
Target Start/End: Complemental strand, 2713519 - 2713415
Alignment:
| Q |
274 |
ctaaaattatacaagatttcatagcattcagatgctgcaacagcatctttctatttagggatcttgttacatgttagtatgttacattctttttcaatca |
373 |
Q |
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| T |
2713519 |
ctaaaattatacaagatgtcatagcattcagatgctgcaacagcatctttctatttagggatcttgttacat--------gttacattctgtttcaatca |
2713428 |
T |
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| Q |
374 |
gttagttagcata |
386 |
Q |
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| T |
2713427 |
gttagttagcata |
2713415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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