View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16384_low_3 (Length: 394)

Name: NF16384_low_3
Description: NF16384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16384_low_3
NF16384_low_3
[»] chr6 (10 HSPs)
chr6 (8-378)||(3595492-3595862)
chr6 (275-378)||(3597829-3597932)
chr6 (126-238)||(17895386-17895497)
chr6 (126-245)||(8319668-8319786)
chr6 (126-245)||(14531469-14531587)
chr6 (126-271)||(21416770-21416917)
chr6 (126-175)||(27574366-27574415)
chr6 (308-376)||(33670711-33670779)
chr6 (11-97)||(17163142-17163228)
chr6 (126-175)||(17160037-17160086)
[»] chr2 (4 HSPs)
chr2 (126-363)||(17255542-17255778)
chr2 (126-271)||(13270692-13270839)
chr2 (126-245)||(8051267-8051385)
chr2 (126-245)||(36670926-36671044)
[»] chr7 (7 HSPs)
chr7 (126-340)||(7678471-7678684)
chr7 (126-245)||(7466204-7466322)
chr7 (126-245)||(7944247-7944365)
chr7 (126-245)||(27757272-27757390)
chr7 (262-361)||(34561096-34561192)
chr7 (11-98)||(13829122-13829209)
chr7 (308-376)||(22581163-22581230)
[»] scaffold0016 (1 HSPs)
scaffold0016 (126-243)||(112346-112462)
[»] chr4 (5 HSPs)
chr4 (127-340)||(53977109-53977321)
chr4 (126-245)||(31355054-31355172)
chr4 (126-271)||(44147405-44147551)
chr4 (126-245)||(27186514-27186632)
chr4 (126-271)||(43683343-43683490)
[»] chr8 (7 HSPs)
chr8 (126-271)||(41945665-41945809)
chr8 (126-245)||(201848-201966)
chr8 (126-245)||(316685-316803)
chr8 (126-237)||(30409967-30410077)
chr8 (126-245)||(43811647-43811765)
chr8 (130-245)||(1286995-1287106)
chr8 (127-216)||(17785995-17786084)
[»] chr3 (8 HSPs)
chr3 (128-271)||(756170-756315)
chr3 (292-357)||(446749-446814)
chr3 (126-245)||(9697956-9698074)
chr3 (126-245)||(54171508-54171626)
chr3 (129-245)||(43548092-43548207)
chr3 (126-245)||(21847503-21847621)
chr3 (280-363)||(30459021-30459104)
chr3 (17-99)||(21849251-21849333)
[»] chr5 (10 HSPs)
chr5 (126-245)||(10274912-10275030)
chr5 (127-273)||(15066972-15067119)
chr5 (126-245)||(7103538-7103656)
chr5 (126-245)||(12019164-12019282)
chr5 (126-245)||(16794544-16794662)
chr5 (126-245)||(37659102-37659220)
chr5 (126-245)||(40371411-40371529)
chr5 (126-237)||(30695679-30695789)
chr5 (17-111)||(40368271-40368365)
chr5 (127-175)||(16598495-16598543)
[»] scaffold0044 (1 HSPs)
scaffold0044 (126-245)||(49029-49147)
[»] chr1 (2 HSPs)
chr1 (126-245)||(39794270-39794388)
chr1 (126-245)||(26311888-26312006)


Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 3595862 - 3595492
Alignment:
Q  8 ccaagaatatatgtcaactttaataaatctgtcatttcacactctttcatcatttggcctttgaacgtttctatctcattcacatcactaccgatcacaa 107  Q
    ||||||| |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  3595862 ccaagaacatatgttagctttaataaatctgtcatttcacactctttcatcattttgcctttgaacgtttctatctcattcacatcactaccggtcacaa 3595763  T
Q  108 tcaagtttcccaattcacgcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3595762 tcaagtttcccaattcacgcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtttctaccttgataattgc 3595663  T
Q  208 gtgattgaagatctctatcaccccttagaacaaaaccatacgctgataccaatttgttagcgcatcttttaaagcttgatcaacaagctagggtttttct 307  Q
    |||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3595662 gtgattgaagttctctatcaccccttagaacaaaaccatactttgataccaatttgttagcgcatcttttaaagcttgatcaacaagctagagtttttct 3595563  T
Q  308 tagggttttgattttattggatttgagagaatagaaagaataggtgaatgaggagattaaaattatgaaag 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3595562 tagggttttgattttattggatttgagagaatagaaagaataggtgaatgaggagattagaattatgaaag 3595492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 275 - 378
Target Start/End: Complemental strand, 3597932 - 3597829
Alignment:
Q  275 tttaaagcttgatcaacaagctagggtttttcttagggttttgattttattggatttgagagaatagaaagaataggtgaatgaggagattaaaattatg 374  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | |||||    
T  3597932 tttaaagcttgatgaacaagctagggtttttcttagggttttgattttattggatttgagagaatagaacgaataggtcaatgaggagattagagttatg 3597833  T
Q  375 aaag 378  Q
    ||||    
T  3597832 aaag 3597829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 17895386 - 17895497
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||||||||   |||||||  || ||| |||  | ||||||||||||||||||||  ||    
T  17895386 gcttcaagaattggaagatgtgtgttgaaactgctactaccattcatggtgtttccttcagcgtttcttcctaca-aattgcgtgattgaagatcttgat 17895484  T
Q  226 caccccttagaac 238  Q
     ||||||||||||    
T  17895485 aaccccttagaac 17895497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 8319668 - 8319786
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || ||||||||||||||   |||||||  || ||| |||  | ||||||||||||||||||||  ||    
T  8319668 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgtttccttcagcgtttcttcctaca-aattgcgtgattgaagatcttgat 8319766  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  8319767 taccccttagaacgaaacca 8319786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 14531469 - 14531587
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| | ||||||| ||||||||||| || ||||||||||||||   ||||| | ||| ||| |||| | ||| ||||||||||||||||  ||    
T  14531469 gcttcaagaattagaagatgtgtgttgaaactgctgctaccattcatggtgtttcctttagtgtttcttccttca-aatagcgtgattgaagatcttgat 14531567  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  14531568 aaccccttagaacgaaacca 14531587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 271
Target Start/End: Original strand, 21416770 - 21416917
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| |||||||||||| | ||||||||| ||||   ||||| |   | ||| |||| | |||||||||||||||||| |  ||    
T  21416770 gcttcaagaattggaagatgtgtgttgaaactattgctaccattcgtggtgtttccttaagcatttcttccttca-aattgcgtgattgaagatattgat 21416868  T
Q  226 caccccttagaacaaaaccatacgc---tgataccaatttgttagcgca 271  Q
     |||||||||||| |||||| | ||   |||| ||||||||||||||||    
T  21416869 aaccccttagaacgaaaccaaaggctcttgatgccaatttgttagcgca 21416917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 27574366 - 27574415
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggt 175  Q
    |||||||||| ||||||||| ||||||||||| || ||||||||||||||    
T  27574366 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggt 27574415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 376
Target Start/End: Complemental strand, 33670779 - 33670711
Alignment:
Q  308 tagggttttgattttattggatttgagagaatagaaagaataggtgaatgaggagattaaaattatgaa 376  Q
    ||||||||||||||||||||| ||||| |||||  |||||   | |||||||||||||| |||||||||    
T  33670779 tagggttttgattttattggaattgagcgaataagaagaaatagagaatgaggagattagaattatgaa 33670711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 17163228 - 17163142
Alignment:
Q  11 agaatatatgtcaactttaataaatctgtcatttcacactctttcatcatttggcctttgaacgtttctatctcattcacatcacta 97  Q
    |||| ||||||||| |||  |||||||| ||||||| |||| |||||||| ||   |||||| | |||||||||||||||| |||||    
T  17163228 agaaaatatgtcaagtttcctaaatctgacatttcaaactcattcatcatctgagttttgaatgcttctatctcattcacaacacta 17163142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 17160086 - 17160037
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggt 175  Q
    |||||||||| || ||||||||||||||||||  | ||||||||||||||    
T  17160086 gcttcaagaattgaaagatgagtgttgaaactgatgctaccattcatggt 17160037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 126 - 363
Target Start/End: Complemental strand, 17255778 - 17255542
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||||| | | |||||||||| ||||||||||||||||||||||||    
T  17255778 gcttcaagaattggaagatgactgttgaaactactgctaccattcatggttactccttcagtctttctaccttga-aattgcgtgattgaagatctctat 17255680  T
Q  226 caccccttagaacaaaaccatacgc---tgataccaatttgttagcgcatcttttaaagcttgatcaacaagc-tagggtttttcttagggttttgattt 321  Q
    |||||||||||||| ||||| | ||   |||| |||||||||||||||| |   || | |||||| ||||||| ||||||||||| ||||||||||| ||    
T  17255679 caccccttagaacagaaccaaaggctcttgatgccaatttgttagcgcagc---tataacttgatgaacaagcttagggtttttc-tagggttttgaatt 17255584  T
Q  322 tattggatttgagagaatagaaagaataggtgaatgaggaga 363  Q
    | ||| ||| ||||||||   |||||||||||||||| ||||    
T  17255583 ttttgaattagagagaatgagaagaataggtgaatgaagaga 17255542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 126 - 271
Target Start/End: Original strand, 13270692 - 13270839
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || ||||||||||||||   |||||||  || ||| |||| | ||||||||||||||||||||  ||    
T  13270692 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgtttccttcagcgtttcttccttca-aattgcgtgattgaagatcttgat 13270790  T
Q  226 caccccttagaacaaaaccatacg---ctgataccaatttgttagcgca 271  Q
     |||||||||||| |||||| | |   ||||| ||||||||||||||||    
T  13270791 aaccccttagaacgaaaccaaaggctcctgatgccaatttgttagcgca 13270839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 8051385 - 8051267
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || |||||||||||||| | |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  8051385 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgattccttcagcgtttctttctaca-aattgcgtgattgaagatcttgat 8051287  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  8051286 taccccttagaacgaaacca 8051267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 36671044 - 36670926
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || |||||||||||||| | |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  36671044 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgattccttcagcgtttctttctaca-aattgcgtgattgaagatcttgat 36670946  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  36670945 taccccttagaacgaaacca 36670926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 126 - 340
Target Start/End: Original strand, 7678471 - 7678684
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||||| |    
T  7678471 gcttcaagaattggaagatgagtgttgaaactactgctaccattcatggttactcctttagtgtttctaccttgataattgcgtgattgaagatctcttt 7678570  T
Q  226 caccccttagaacaaaaccatacgc---tgataccaatttgttagcgcatcttttaaagcttgatcaacaagctagggtttttcttagggttttgatttt 322  Q
    || |||||||||| |||| | | ||   |||| ||||||| |||||||| | ||  | ||||| |  ||||||||||||||||| |||||||||||||||    
T  7678571 ca-cccttagaacgaaacta-aggctcatgatgccaatttattagcgcaac-ttcgatgcttgtttcacaagctagggtttttc-tagggttttgatttt 7678666  T
Q  323 attggatttgagagaata 340  Q
    |||| |||||||||||||    
T  7678667 attgaatttgagagaata 7678684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 7466204 - 7466322
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || ||||||||||||||   |||||||  || ||| |||| | ||||||||||||||||||||  ||    
T  7466204 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgtttccttcagcgtttcttccttca-aattgcgtgattgaagatcttgat 7466302  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||||||||||    
T  7466303 aaccccttagaacaaaacca 7466322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 7944247 - 7944365
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || |||||||||||||| | |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  7944247 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgattccttcagcgtttctttctaca-aattgcgtgattgaagatcttgat 7944345  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  7944346 taccccttagaacgaaacca 7944365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 27757390 - 27757272
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || ||||||||||||||   |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  27757390 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgtttccttcagcgtttctttctaca-aattgcgtgattgaagatcttgat 27757292  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  27757291 taccccttagaacgaaacca 27757272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 361
Target Start/End: Original strand, 34561096 - 34561192
Alignment:
Q  262 tgttagcgcatcttttaaagcttgatcaacaagctagggtttttcttagggttttgattttattggatttgagagaatagaaagaataggtgaatgagga 361  Q
    |||||||||| |||  || ||||| || ||||| ||||||||||   |||||||||||||||||||| |||||||||||  ||||||||  |||||||||    
T  34561096 tgttagcgcagcttacaatgcttgttccacaaggtagggttttt---agggttttgattttattggaattgagagaataagaagaatagaagaatgagga 34561192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 13829122 - 13829209
Alignment:
Q  11 agaatatatgtcaactttaataaatctgtcatttcacactctttcatcatttggcctttgaacgtttctatctcattcacatcactac 98  Q
    |||| ||||||||| |||  |||||||| ||||||| |||| |||||||| ||   |||||| | |||||||||||||||||||||||    
T  13829122 agaaaatatgtcaagtttcctaaatctgacatttcaaactcattcatcatctgagttttgaatgcttctatctcattcacatcactac 13829209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 376
Target Start/End: Complemental strand, 22581230 - 22581163
Alignment:
Q  308 tagggttttgattttattggatttgagagaatagaaagaataggtgaatgaggagattaaaattatgaa 376  Q
    |||||||||||||| ||| || |||||||||||  ||||||| | |||||||| ||||| |||||||||    
T  22581230 tagggttttgatttaatttgaattgagagaataagaagaata-gagaatgaggggattagaattatgaa 22581163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 112462 - 112346
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| |||||||||||||||||||||| |  ||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| |    
T  112462 gcttcaagaattggaagatgagtgttgaaactattgttaccattcatggttaatccttcaatgtttctaccttgataattgcgtgattgaagatctcttt 112363  T
Q  226 caccccttagaacaaaac 243  Q
    || |||||||||| ||||    
T  112362 ca-cccttagaacgaaac 112346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 127 - 340
Target Start/End: Complemental strand, 53977321 - 53977109
Alignment:
Q  127 cttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctatc 226  Q
    |||||| || || |||||||| |||||||||| | |||||||||||||| ||||||||| ||| ||||| |||||||||| |||||||||||||||| ||    
T  53977321 cttcaaaaattgaaagatgagggttgaaactattgctaccattcatggttactccttcagtgtttctactttgataattgtgtgattgaagatctctttc 53977222  T
Q  227 accccttagaacaaaaccatacgc---tgataccaatttgttagcgcatcttttaaagcttgatcaacaagctagggtttttcttagggttttgatttta 323  Q
    | |||||||||| | |||| |  |   |||| |||||||||||||||| |||  || ||||| || ||||||||| |||||  |||||||||||  ||||    
T  53977221 a-cccttagaacgataccaaagactcttgatgccaatttgttagcgcaacttacaatgcttgttctacaagctagagtttt--ttagggttttg-gttta 53977126  T
Q  324 ttggatttgagagaata 340  Q
    | ||| |||||||||||    
T  53977125 taggaattgagagaata 53977109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 31355172 - 31355054
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| |||||||||||||||||||||||| ||||||||| |||||| |||||||| || ||| |||| | ||||||||||||||||||||  ||    
T  31355172 gcttcaagaattggaagatgagtgttgaaactactgctaccattcttggtcattccttcaacgtttcttccttca-aattgcgtgattgaagatcttgat 31355074  T
Q  226 caccccttagaacaaaacca 245  Q
     |||| ||||||| ||||||    
T  31355073 taccctttagaacgaaacca 31355054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 271
Target Start/End: Complemental strand, 44147551 - 44147405
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || ||||||||||||||   |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  44147551 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgtttccttcagcgtttctttctaca-aattgcgtgattgaagatcttgat 44147453  T
Q  226 caccccttagaacaaaaccata--cgctgataccaatttgttagcgca 271  Q
     |||||||||||| |||||| |  | |||||||||||||| |||||||    
T  44147452 taccccttagaacgaaaccaaaggctctgataccaatttgatagcgca 44147405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 27186632 - 27186514
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| || |||||| ||||||||||| || ||||||||||||||   |||||||| || ||| |||| | |||||| |||||||||||||  ||    
T  27186632 gcttcaagaattgaaagatgtgtgttgaaactgctgctaccattcatggtgtttccttcaacgtttcttccttca-aattgcatgattgaagatcttgat 27186534  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  27186533 aaccccttagaacgaaacca 27186514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 271
Target Start/End: Original strand, 43683343 - 43683490
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||   | |||||   | ||| |||| | |||||| |||||||||||||  ||    
T  43683343 gcttcaagaattggaagatgagtgttgaaactactgctaccattcatggtgttttcttcagcttttcttccttca-aattgcatgattgaagatcttgat 43683441  T
Q  226 caccccttagaacaaaaccatacgc---tgataccaatttgttagcgca 271  Q
     |||||||||||| ||| || | ||   |||| ||||||||||||||||    
T  43683442 taccccttagaacgaaatcaaaggctcttgatgccaatttgttagcgca 43683490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 126 - 271
Target Start/End: Complemental strand, 41945809 - 41945665
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||| | ||||||||| | || ||||||||||||||  | ||||||| || ||| |||| | ||||||||||||||||||||  ||    
T  41945809 gcttcaagaattggaagacgtgtgttgaaattgctgctaccattcatggtgtcaccttcaacgtttcttccttca-aattgcgtgattgaagatcttgat 41945711  T
Q  226 caccccttagaacaaaaccatacgctgataccaatttgttagcgca 271  Q
     |||||||||||| |||||| |  ||||||| ||||||||||||||    
T  41945710 taccccttagaacgaaaccacagtctgatacgaatttgttagcgca 41945665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 201848 - 201966
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || ||||||||||||||   |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  201848 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgtttccttcagcgtttctttctaca-aattgcgtgattgaagatcttgat 201946  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  201947 taccccttagaacgaaacca 201966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 316685 - 316803
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || ||||||||||||||   |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  316685 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgtttccttcagcgtttctttctaca-aattgcgtgattgaagatcttgat 316783  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  316784 taccccttagaacgaaacca 316803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 237
Target Start/End: Original strand, 30409967 - 30410077
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || ||||||||||||||   |||||||  || ||| |||  | ||||||||||||||||||||  ||    
T  30409967 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgtttccttcagcgtttcttcctaca-aattgcgtgattgaagatcttgat 30410065  T
Q  226 caccccttagaa 237  Q
     |||||||||||    
T  30410066 taccccttagaa 30410077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 43811647 - 43811765
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || ||||||||||||||   |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  43811647 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgtttccttcagcgtttctttctaca-aattgcgtgattgaagatcttgat 43811745  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  43811746 taccccttagaacgaaacca 43811765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 245
Target Start/End: Complemental strand, 1287106 - 1286995
Alignment:
Q  130 caagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctatcacc 229  Q
    |||||| ||||||||||||||||||||| |||    ||||||||||   |||||||  || ||| |||| | ||||||||||||||||||||  || |||    
T  1287106 caagaattggaagatgagtgttgaaactgctat---cattcatggtgtttccttcagcgtttcttccttca-aattgcgtgattgaagatcttgattacc 1287011  T
Q  230 ccttagaacaaaacca 245  Q
    ||||||||||||||||    
T  1287010 ccttagaacaaaacca 1286995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 17785995 - 17786084
Alignment:
Q  127 cttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaa 216  Q
    ||||||||| ||||||||||||||| |||||||| ||| |||||||||   || || |||||| ||| |||||||| |||| ||||||||    
T  17785995 cttcaagaattggaagatgagtgttaaaactactgctatcattcatggcttcttctacaatgtttcttccttgatacttgcatgattgaa 17786084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 128 - 271
Target Start/End: Complemental strand, 756315 - 756170
Alignment:
Q  128 ttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctatca 227  Q
    |||||||| ||||||||||||||||||||| || |||||||||||||| | ||||||||  | ||| |||| | ||||||||||||||||||||  || |    
T  756315 ttcaagaattggaagatgagtgttgaaactgctgctaccattcatggtgattccttcaacatttcttccttca-aattgcgtgattgaagatcttgatta 756217  T
Q  228 ccccttagaacaaaaccatacgc---tgataccaatttgttagcgca 271  Q
    ||||||||||| ||| || | ||   |||| ||||||||||||||||    
T  756216 ccccttagaacgaaatcacaagctattgatgccaatttgttagcgca 756170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 446749 - 446814
Alignment:
Q  292 aagctagggtttttcttagggttttgattttattggatttgagagaatagaaagaataggtgaatg 357  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  446749 aagctagggtttttcttaaggttttgattttattgggtttgagagaatagaaagactagatgaatg 446814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 9698074 - 9697956
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| || |||||| ||||||||||| || ||||||||||||||   |||||||| || ||| |||| | |||||| |||||||||||||  ||    
T  9698074 gcttcaagaattgaaagatgtgtgttgaaactgctgctaccattcatggtgtttccttcaacgtttcttccttca-aattgcatgattgaagatcttgat 9697976  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  9697975 aaccccttagaacgaaacca 9697956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 54171508 - 54171626
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || |||||||||||||| | |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  54171508 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgattccttcagcgtttctttctaca-aattgcgtgattgaagatcttgat 54171606  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  54171607 taccccttagaacgaaacca 54171626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 245
Target Start/End: Complemental strand, 43548207 - 43548092
Alignment:
Q  129 tcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctatcac 228  Q
    ||||||| ||||||||| ||||||||||| || ||||||||||||||   |||||||  || ||| |||| | || |||||||||||||||||  || ||    
T  43548207 tcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgtttccttcagcgtttcttccttca-aactgcgtgattgaagatcttgataac 43548109  T
Q  229 cccttagaacaaaacca 245  Q
    |||||||||| ||||||    
T  43548108 cccttagaactaaacca 43548092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 21847621 - 21847503
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || ||||||||||||||   |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  21847621 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgtttccttcagcgtttctttctata-aattgcgtgattgaagatcttgat 21847523  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  21847522 taccccttagaacgaaacca 21847503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 30459021 - 30459104
Alignment:
Q  280 agcttgatcaacaagct-agggtttttcttagggttttgattttattggatttgagagaatagaaagaataggtgaatgaggaga 363  Q
    |||||||| |||||||| ||||||||||| |||||||||| ||| ||| ||| ||||||||   |||||||||||||||| ||||    
T  30459021 agcttgatgaacaagcttagggtttttct-agggttttgaatttgttgaattagagagaatgagaagaataggtgaatgaagaga 30459104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 21849333 - 21849251
Alignment:
Q  17 tatgtcaactttaataaatctgtcatttcacactctttcatcatttggcctttgaacgtttctatctcattcacatcactacc 99  Q
    |||||||| |||  |||||||| ||||||| ||||  ||||||||||   |||||| | |||||||||||||| |||||||||    
T  21849333 tatgtcaattttcctaaatctgacatttcaaactcactcatcatttgtgatttgaatgcttctatctcattcatatcactacc 21849251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 10275030 - 10274912
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| |||||||||  |||||||||| || ||||||||||||||   ||||||| ||| ||| |||| | ||||||||||||||||||||  ||    
T  10275030 gcttcaagaattggaagatgtttgttgaaactgctgctaccattcatggtgtttccttcagtgtttcttccttca-aattgcgtgattgaagatcttgat 10274932  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  10274931 taccccttagaacgaaacca 10274912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 273
Target Start/End: Original strand, 15066972 - 15067119
Alignment:
Q  127 cttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctac-cttgataattgcgtgattgaagatctctat 225  Q
    ||||||||| ||||||||| || |||||||| || ||||||||||| ||  ||||| |||||| ||| | ||||||||||| |||||| ||| | |||      
T  15066972 cttcaagaattggaagatgtgtattgaaactgctgctaccattcattgtttctcctacaatgtttcttctcttgataattgtgtgattcaaggtttcttg 15067071  T
Q  226 caccccttagaacaaaaccatacgctgataccaatttgttagcgcatc 273  Q
    ||||||||| ||| ||||||  | ||||| ||||||||||||||||||    
T  15067072 caccccttaaaacgaaaccaggctctgatgccaatttgttagcgcatc 15067119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 7103538 - 7103656
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || |||||||||||||| | |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  7103538 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgattccttcagcgtttctttctaca-aattgcgtgattgaagatcttgat 7103636  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  7103637 taccccttagaacgaaacca 7103656  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 12019282 - 12019164
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || |||||||||||||| | |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  12019282 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgattccttcagcgtttctttctaca-aattgcgtgattgaagatcttgat 12019184  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  12019183 taccccttagaacgaaacca 12019164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 16794662 - 16794544
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || |||||||||||||| | |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  16794662 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgattccttcagcgtttctttctaca-aattgcgtgattgaagatcttgat 16794564  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  16794563 taccccttagaacgaaacca 16794544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 37659220 - 37659102
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || |||||||||||||| | |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  37659220 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgattccttcagcgtttctttctaca-aattgcgtgattgaagatcttgat 37659122  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  37659121 taccccttagaacgaaacca 37659102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 40371411 - 40371529
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || ||||||||||||||   |||||||  || ||| |||  | ||||||||||||||||||||  ||    
T  40371411 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgtttccttcagcgtttcttcctaca-aattgcgtgattgaagatcttgat 40371509  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  40371510 aaccccttagaacgaaacca 40371529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 237
Target Start/End: Complemental strand, 30695789 - 30695679
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || ||||||||||||||   |||||||  || ||| |||  | ||||||||||||||||||||  ||    
T  30695789 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgtttccttcagcgtttcttcctaca-aattgcgtgattgaagatcttgat 30695691  T
Q  226 caccccttagaa 237  Q
     |||||||||||    
T  30695690 taccccttagaa 30695679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 40368271 - 40368365
Alignment:
Q  17 tatgtcaactttaataaatctgtcatttcacactctttcatcatttggcctttgaacgtttctatctcattcacatcactaccgatcacaatcaa 111  Q
    |||||||| |||  |||||||| ||||||| ||||  ||||||| ||   |||||| | |||||||||||||| ||||||||| ||||| |||||    
T  40368271 tatgtcaattttcctaaatctgacatttcaaactcactcatcatctgtgatttgaatgcttctatctcattcatatcactaccaatcactatcaa 40368365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 16598495 - 16598543
Alignment:
Q  127 cttcaagaactggaagatgagtgttgaaactactactaccattcatggt 175  Q
    ||||||||| |||||||||||| |||||| | || ||||||||||||||    
T  16598495 cttcaagaattggaagatgagtattgaaaatgctgctaccattcatggt 16598543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 49029 - 49147
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || |||||||||||||| | |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  49029 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgattccttcagcgtttctttctaca-aattgcgtgattgaagatcttgat 49127  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||| ||||||    
T  49128 taccccttagaacgaaacca 49147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 39794388 - 39794270
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||||||| ||||||||||| || ||||||||||||||   |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  39794388 gcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatggtgtttccttcagcgtttctttctaca-aattgcgtgattgaagatcttgat 39794290  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||||||||||    
T  39794289 taccccttagaacaaaacca 39794270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 26312006 - 26311888
Alignment:
Q  126 gcttcaagaactggaagatgagtgttgaaactactactaccattcatggtcactccttcaatgtatctaccttgataattgcgtgattgaagatctctat 225  Q
    |||||||||| ||||| ||| ||||||||||| ||  |||||||||||||   |||||||  || |||  ||  | ||||||||||||||||||||  ||    
T  26312006 gcttcaagaattggaatatgtgtgttgaaactgctgttaccattcatggtgtttccttcagcgtttctttctaca-aattgcgtgattgaagatcttgat 26311908  T
Q  226 caccccttagaacaaaacca 245  Q
     |||||||||||||||||||    
T  26311907 taccccttagaacaaaacca 26311888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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