View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16384_low_4 (Length: 281)
Name: NF16384_low_4
Description: NF16384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16384_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 10935974 - 10935733
Alignment:
| Q |
18 |
aatcaaacactgtagagaacctgaaaatcattatcaaacccagtatgtaacaaaattaaatcagaaaatgagtaaactcgaactggaatagtgaaatttc |
117 |
Q |
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| T |
10935974 |
aatcaaacactgtagagaacctgaaaatcattatcaaacccagtatgtaacaaaattaaatcagaaaatgagtaaacttgaactggaatagtgaaatttc |
10935875 |
T |
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| Q |
118 |
ttttgccataacagaacaataaatggcaccctccaagacaaacaaacggaaataaataataacaatatcaaccaaatattatcacattaagtggatcagc |
217 |
Q |
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| T |
10935874 |
ttttgccataacagaacaataaatggcaccctccaagacaaacacacggagataaataataacaatatcaaccaaacattatcacattaagtggatcagc |
10935775 |
T |
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| Q |
218 |
tacatctatctcttcaagataccaaattcttattccacaaat |
259 |
Q |
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| T |
10935774 |
tacatctatctcttcaagataccaaattcttattccacaaat |
10935733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 10961117 - 10960880
Alignment:
| Q |
22 |
aaacactgtagagaacctgaaaatcattatcaaacccagtatgtaacaaaattaaatcagaaaatgagtaaactcgaactggaatagtgaaatttctttt |
121 |
Q |
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| T |
10961117 |
aaacactgtagagaacctgaaaattattattgaaaccagtaagttacaaaattaaataa-aaaaggagtaaac---atctggaatagtgtaagttatttc |
10961022 |
T |
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| Q |
122 |
gccataacagaa------------caataaatggcaccctccaagacaaacaaacggaaataaataataacaatatc-aaccaaat-attatcacattaa |
207 |
Q |
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| T |
10961021 |
ggcataacagaaaaggtacaagtacaataaagggcaccctccaaaacaaacaaatggaaataaataattacaataacaaaacatatccttatctcattga |
10960922 |
T |
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| Q |
208 |
gtggatcagctacatctatctcttcaagataccaaattctta |
249 |
Q |
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| T |
10960921 |
gtggatcagctacatctctctcttcaaaataccaaaatctta |
10960880 |
T |
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