View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16384_low_6 (Length: 245)
Name: NF16384_low_6
Description: NF16384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16384_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 8552151 - 8551933
Alignment:
| Q |
1 |
tgtctgtgaccctcttttctgttcactaggagagtatatattttgaagtttgaaccaacatcgaaaatagttaccacttacaacatctactatagtcatt |
100 |
Q |
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| T |
8552151 |
tgtctgtgaccctcttttctgttcactaggagagtatatattttgaagtttgaaccaacatcgaaaatagttaccacttacaacatctaatatagtcatt |
8552052 |
T |
|
| Q |
101 |
attatttgcatgtcctcctctcttagcttagcttatctatcagtatgaatgaataacgaatcaatggtgagtgaatcaaatttggatccggattatcgac |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8552051 |
attatttgcatgtcctcctctcttag-----cttatctatgagtatgaatgaataacgaatcaatg----gtgaatcaaatttggatccggattatcgac |
8551961 |
T |
|
| Q |
201 |
cgtcggaaaatggtgcaatagcaaatat |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
8551960 |
cgtcggaaaatggtgcaatagcaaatat |
8551933 |
T |
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