View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16385_high_1 (Length: 465)
Name: NF16385_high_1
Description: NF16385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16385_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 21549887 - 21550334
Alignment:
| Q |
1 |
atatctctcaccgtttcatatgaacatatctatgtcttaaatcctttagagtttcatttctttcttaatttgatctgcgaaccattatgcctgtattttc |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21549887 |
atatctctcactgtttcatatgaacatatctatgtcttgaatcctttagagtttcatttctttcttaatttgatctgcgaaccattatgcctgtattttc |
21549986 |
T |
|
| Q |
101 |
tcccattgaatgactccaagttgttatgtcacagtcatttataacttccattgctaaa--ttcatgtctcataattcatgattgtggaaagctgaaaccg |
198 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21549987 |
tcccattgaatgactccaagttgttatgtcatagtcatttattacttccattgctaaaaattcatgtctcataattcatgattgtggaaagctgaaaccg |
21550086 |
T |
|
| Q |
199 |
tgtattagatcttaacctgatctgaaattaagttaatgtgatctttgcctttgtggtttgatatttgggctctctctcccctcttttcatatcttggatt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21550087 |
tgtattagatcttaacctgatctgaaattaagttaacgtgatctttgcctttgtggtttgatatttgggctctctctcccctcttttcatatcttggatt |
21550186 |
T |
|
| Q |
299 |
ttggtgttatcaatcacatatggaggttaacaaaaaatctgccctggtgccactatccttcacaaattggccacacggttgtnnnnnnnnnnnnnnnntc |
398 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21550187 |
ttggtgttatcaatcacatatggaggataacaaaaaatctgccctggtgccactatccttcacaaattggccacacggttgt------aaaaaaaaaatc |
21550280 |
T |
|
| Q |
399 |
cgccactgcaatcgtccatggcactagttgaaaatactcttgctggtggtaaat |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21550281 |
cgccactgcaatcgtccatggcactagttgaaaatactcttgctggtggtaaat |
21550334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 20362189 - 20362619
Alignment:
| Q |
1 |
atatctctcaccgtttcatatgaacatatctatgtcttaaatcctttagagtttcatttctttcttaatttgatctgcgaaccattatgcctgtattttc |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| | |
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| T |
20362189 |
atatctctcactgtttcatatgaacatatctatgtcttgaatcctttagagtttcgtttcttttttaatttgatccgcgaaccattatgtctg------c |
20362282 |
T |
|
| Q |
101 |
tcccattgaatgactccaagttgttatgtcacagtcatttataacttccattgctaaattcatgtctcataattcatgattgtggaaagctgaaaccgtg |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
20362283 |
tcccattgaatgactagaagttgttatgtcacagtcatttattacttccattgctaaattcatgtctcataattcatgattgtggaatgctgaaaccgtg |
20362382 |
T |
|
| Q |
201 |
tattagatcttaacctgatctgaaattaagttaatgtgatct--ttgcctttgtggtttgatatttggg--ctctctctcccctcttttcatatcttgga |
296 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| | ||||| |
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| T |
20362383 |
tattagatc---------tctgaaattaagttaatgtgatcttcttgcctttgtggtttgatatttgggctctctctctctcctcttttcatgttttgga |
20362473 |
T |
|
| Q |
297 |
ttttggtgttatcaatcacatatggaggttaacaaaaaatctgccctggtgccactatccttcacaaattggccacacggttgt-nnnnnnnnnnnnnnn |
395 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
20362474 |
ttttggtgttatcaa------------gttaacaaaaaatctgcccttgtgccactatccttcacaaattggccacacggctgtaaaaaaataaaaataa |
20362561 |
T |
|
| Q |
396 |
ntccgccactgcaatcgtccatggcactagttgaaaatact-cttgctggtggtaaat |
452 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
20362562 |
atctgccactgcaatcgtccatggcactagttgaaaatactcctagctggtggtaaat |
20362619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 292 - 370
Target Start/End: Original strand, 32194670 - 32194748
Alignment:
| Q |
292 |
ttggattttggtgttatcaatcacatatggaggttaacaaaaaatctgccctggtgccactatccttcacaaattggcc |
370 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32194670 |
ttggattttggtgttatcaatcacatatggaggttaacaaaaaatcttccctggtgccactatccttcacaaattggcc |
32194748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 437
Target Start/End: Original strand, 32194775 - 32194811
Alignment:
| Q |
401 |
ccactgcaatcgtccatggcactagttgaaaatactc |
437 |
Q |
| |
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| T |
32194775 |
ccactgcaatcgtccatggcactagttaaaaatactc |
32194811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 44313741 - 44313787
Alignment:
| Q |
232 |
taatgtgatctt--tgcctttgtggtttgatatttgggctctctctc |
276 |
Q |
| |
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|||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
44313741 |
taatgtgatcttcttgcctttgtcgtttgatatttgggctctctctc |
44313787 |
T |
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