View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16385_low_3 (Length: 362)
Name: NF16385_low_3
Description: NF16385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16385_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 1923062 - 1922731
Alignment:
| Q |
13 |
aaaatattttcgaaacacaattgtgatgtaactattagggtaacaagaacaatatagtatatatttgatgaagaaggatatttgtacatagaagagaaaa |
112 |
Q |
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| T |
1923062 |
aaaatattttcgaaacacaattgtgatgtaactattagggcaacaagaacaatatagtatatatttgatgaagaagggtatttgtacatagaagagaaaa |
1922963 |
T |
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| Q |
113 |
gcatcaaagatggacattttggtcactgcttcatggaaatctttatggatggaatggtgcataagtcttgtaaaaagagctctaatgggatttgtagaca |
212 |
Q |
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| T |
1922962 |
gcatcaaagatggacattttggtcactgcttcatggaaatctttatggatggaatggtgcataagtcttgtaaaaagagctctaatgggatttgtagacc |
1922863 |
T |
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| Q |
213 |
acatggttttgcttgatacaaggctatactttgatgaaatttgtgtgtgtcatttagagaaaaacttcagagtatttataaacgcaagggtgaggactta |
312 |
Q |
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| T |
1922862 |
acatgcttttgcttgatacaaggctatactttgatgaaatttgtgtgtgtcatttagagaaaaactttagagtatttataaactcaagggtgaggactta |
1922763 |
T |
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| Q |
313 |
gaagtttcgtctctttcaatttgaatgtggtgg |
345 |
Q |
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| T |
1922762 |
gaag-ttcgtctctttcaatttgaatgtggtgg |
1922731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 1936737 - 1936644
Alignment:
| Q |
78 |
tgatgaagaaggatatttgtacatagaagagaaaagcatcaaagatggacattttggtcactgcttcatggaaatctttatggatggaatggtg |
171 |
Q |
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| T |
1936737 |
tgatgaagaaaagtatttatacaaggaagagaaaagcatctatgatggacatttttgccactgctgcatggaaatctttatggatggcatggtg |
1936644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 234
Target Start/End: Complemental strand, 1952243 - 1952080
Alignment:
| Q |
77 |
ttgatgaagaaggatatttgtacatagaagagaaaagcatcaaagatggacattttggtcactgcttcatggaaatctttatggatggaatggtgcataa |
176 |
Q |
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|||||| || ||| |||| ||| | |||| ||||||||||| | ||||| |||||| ||||| ||||||||||||||||||||| |||||| || |||| |
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| T |
1952243 |
ttgatggaggagggtattcgtataaagaaaagaaaagcatctatgatggtcattttcttcactacttcatggaaatctttatggaaggaatgttgtataa |
1952144 |
T |
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| Q |
177 |
gtcttgtaaaaagagctctaatgggatttgt------agacaacatggttttgcttgatacaag |
234 |
Q |
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| T |
1952143 |
ctattgtaacaagatttctaatgggatctgttactaaagaccacatgattttgcttgatacaag |
1952080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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