View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16385_low_5 (Length: 298)
Name: NF16385_low_5
Description: NF16385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16385_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 1498468 - 1498212
Alignment:
| Q |
13 |
gattatactagtacaagtgggtgacatgacatggatttgctgtgttggtccacaacattggagcctgcttttgttcctacttccttcaatactctcttag |
112 |
Q |
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| T |
1498468 |
gattctactagtacaagtgggtgacatgacatggatttgctgtgttggtccacaacattggagcctgcttttgttcctacttccttcaatgctctcttag |
1498369 |
T |
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| Q |
113 |
acaggtaaggtaactagtgctttgtcttcaagattggttcatgtgacccaaatcaaatcaatttcagtgtttgaataaataaatatacatactataatag |
212 |
Q |
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| T |
1498368 |
acag-----gtaactagtgctttgtcttcaagattggttcatgtgacc-----caaatcaatttcagtgtttg----aataaatatacatactataatag |
1498283 |
T |
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| Q |
213 |
tagtgtaaagccactaattaatctaaattaagattttggaaggcctcaaccttttattagatttaaatatt |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1498282 |
tagtgtaaagccactaattaatctaaattaagattttggaaggcctcaaccttttattagatttatatatt |
1498212 |
T |
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