View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16386_high_3 (Length: 279)
Name: NF16386_high_3
Description: NF16386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16386_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 54277436 - 54277167
Alignment:
| Q |
1 |
tctatgtacctttttcatctcacaagtgctttcctccataatgtaaggataatcttcctctttatgtagtccaccgttttttacaatgaaggagaatgca |
100 |
Q |
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| T |
54277436 |
tctatgtacctttttcatctcacaagtgctttcctccataatgtaaggataatcttcctctttatgtagtccaccgttttttacaatgaaggagaatgca |
54277337 |
T |
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| Q |
101 |
tagtccattagacccccattgcaaccattgttgtaagttgtgtcacagtcgattaattcttgctcggacaaagatgtcaaattccctgtcacaatttggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54277336 |
tagtccattagacccccattgcaaccattgttgtaagttgtgtcacagtcgattaattcttgctcggacaaagatgtcaaattccctgtcacaatttggt |
54277237 |
T |
|
| Q |
201 |
ttattccttcaaccgcagcaacagtcgaaaatgcccagcaactacctgcaagtactcgtgttcatctcac |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54277236 |
ttattccttcaaccgcagcaacagtcgaaaatgcccagcaactacctgcaagtactcgtgttcatatcac |
54277167 |
T |
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