View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16386_low_2 (Length: 505)
Name: NF16386_low_2
Description: NF16386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16386_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 21 - 496
Target Start/End: Complemental strand, 32604442 - 32603963
Alignment:
| Q |
21 |
gtcccttaggaagtttgagtggtcctagttgcctattgaaggagtggttctagaatggaacataaactgaaatgggactctgattct--ttgagactgga |
118 |
Q |
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| T |
32604442 |
gtcccttaggaagtttgagtggtcctagttccctattgaaggagtggttctagaatggaacataaattgaaatgggactctgattctgtttgagattgga |
32604343 |
T |
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| Q |
119 |
ttagttttattctaatggttttgtggttgaaaagtttgataatttggttatatagaatgagtttaatgtgaattagagtggcaaacaaaccatgtag--a |
216 |
Q |
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| T |
32604342 |
ttagttttattctaatggttttgtggttgaaaagtttgataatttggttatatagaatgagtttaatgtgaattagagtggcaaacat-ccatgttggaa |
32604244 |
T |
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| Q |
217 |
taacttactcatatttggttcaaacatccatgttgtaaaaatggttaaatcattgttatggaataactt-gatatgaaagaactcagaaaaacaagtact |
315 |
Q |
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| T |
32604243 |
taccttactcatatttggttcaaacatccatgttgtaaaaatggttaaatcattgttatggaataactttgatatgaaagaactcagaaaaacaagta-- |
32604146 |
T |
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| Q |
316 |
gtataatcttaggaaaacattatcgtactacatttataagactcttttttccacaatcattttttccacacagttcaaataatgaactatgttgcttttt |
415 |
Q |
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| T |
32604145 |
---taatcttgggaaaacattatcgtactacatttataagactcttttttccacaatcattttttccacacagttcaaataatgaactatgttgcttttt |
32604049 |
T |
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| Q |
416 |
taagtcttaataa-----tatgttgctttttcccatgtgtgtgtaatcgtaacatgttttccatgtgtgtgtaatccaagtataat |
496 |
Q |
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| T |
32604048 |
taagtcttaataatgaactaagttgctttttcccatgtgtgtgtaatcgtaacatgttttccatgtgtgtgtaatccaagtataat |
32603963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 364
Target Start/End: Complemental strand, 32603901 - 32603870
Alignment:
| Q |
333 |
cattatcgtactacatttataagactcttttt |
364 |
Q |
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| T |
32603901 |
cattatcgtactacatttataagactcttttt |
32603870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 11811504 - 11811459
Alignment:
| Q |
210 |
atgtagataacttactcatatttggttcaaacatccatgttgtaaa |
255 |
Q |
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| T |
11811504 |
atgtagatgacttgctcacatttggttcaaagatccatgttgtaaa |
11811459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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