View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16387_high_1 (Length: 577)
Name: NF16387_high_1
Description: NF16387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16387_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 10 - 559
Target Start/End: Complemental strand, 27426601 - 27426054
Alignment:
| Q |
10 |
attattctaaaacaccatgtggaggttcgtgagccattgtctcatactaaaccctgtcatataaaatagcctactaagtactaaccattcaactctttaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27426601 |
attattctaaaacaccatgtggaggttcgtgagccattgtctcatactaaaccctgtcatataatatagcctactaagtactaaccattcaactctttaa |
27426502 |
T |
|
| Q |
110 |
ataaggatatcctaacagggaccatggaatgaggcctctgtcattcagtgaaataattgaccttgttactgaattgttattgtgcacttgttgtttatga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27426501 |
ataaggatatcctaacagggaccatggaatgaggcctgtgtcattcagtgaaataattgaccttgttactgaattgttattgtgcacttgttctttatga |
27426402 |
T |
|
| Q |
210 |
agggaagttacctcatgtctatgttatgtagttattaaaaagaaaagtttgtaaatttatgtatcacctttgtcctatgaaaattaattttgctataccc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27426401 |
agggaagttacctcatgtctatgttatgtagttattaaaaagaaaactttgtaaatttatgtttcacctttgtcctatgaaaattaattttgctataccc |
27426302 |
T |
|
| Q |
310 |
ttgctaggaatcatgtgttctggtcctgctttgaaatgtttcagaatacaaagtattttttccttttagcaaacaacattactcatatagtcgtatttca |
409 |
Q |
| |
|
||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27426301 |
ttg-taggaat-atgtgttctagtcctgctttgaaatgtttcagaatacaaagtatttttgtcttttagtaaacaacattactcatatagtcgtatttca |
27426204 |
T |
|
| Q |
410 |
taagtttataagttcattaagtgcgataaaccaaaaacgtagaagagctgcttgagtagttgaattcattctcattaaacaaaacatatttacaatttgc |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27426203 |
taagtttataagttcattaagtgcgataaaccaaaaacgtaaaagagctgcttgagtagttgaattcattctcattaaacaaaacatatttacaatttgc |
27426104 |
T |
|
| Q |
510 |
caatctaatggtcatttccttctcatcttttagaatttgatgagataact |
559 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27426103 |
taatctaatggtcatttccttctcatcttttagaatttgatgagataact |
27426054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 84 - 201
Target Start/End: Complemental strand, 27416377 - 27416260
Alignment:
| Q |
84 |
taagtactaaccattcaactctttaaataaggatatcctaacagggaccatggaatgaggcctctgtcattcagtgaaataattgaccttgttactgaat |
183 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||| ||||||| ||||| |
|
|
| T |
27416377 |
taagtactaaccattcaattctttagataaggatatcctaacaggaaccatataatgaggcctatgtcattcagtgaaataatttcccttgttgatgaat |
27416278 |
T |
|
| Q |
184 |
tgttattgtgcacttgtt |
201 |
Q |
| |
|
|| ||||||| ||||||| |
|
|
| T |
27416277 |
tggtattgtgtacttgtt |
27416260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 95 - 198
Target Start/End: Complemental strand, 27420906 - 27420803
Alignment:
| Q |
95 |
cattcaactctttaaataaggatatcctaacagggaccatggaatgaggcctctgtcattcagtgaaataattgaccttgttactgaattgttattgtgc |
194 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| ||||| ||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||| | |
|
|
| T |
27420906 |
cattcaattctttagataaggatatcctaacaggcaccatagaatgcagcctatgtcattcagtgaaacaattgactttgttactgaattgttattgtac |
27420807 |
T |
|
| Q |
195 |
actt |
198 |
Q |
| |
|
|||| |
|
|
| T |
27420806 |
actt |
27420803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 27569459 - 27569575
Alignment:
| Q |
84 |
taagtactaaccattcaactctttaaataaggatatcctaacagggaccatggaatgaggcctctgtcattcagtgaaataattgaccttgttact-gaa |
182 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||||||||||||||||| ||||| |||||||| | ||||||| |||| |||||||||| |||||||| | | |
|
|
| T |
27569459 |
taagtagtaaccattcaattctttagataaggatatcctaacaggaaccatagaatgaggaatgtgtcattaagtggaataattgactttgttactggca |
27569558 |
T |
|
| Q |
183 |
ttgttattgtgcacttg |
199 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
27569559 |
ttgtaattgtgcacttg |
27569575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 426 - 526
Target Start/End: Original strand, 27565714 - 27565814
Alignment:
| Q |
426 |
ttaagtgcgataaaccaaaaacgtagaagagctgcttgagtagttgaattcattctcattaaacaaaacatatttacaatttgccaatctaatggtcatt |
525 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||| |||| ||||||||| || |||||||||| || |||||||| |||||||||||||||| |
|
|
| T |
27565714 |
ttaagtgcaataaaccaaaaacatagaagagctgcttgaatagtcgaattcattgtcgttaaacaaaattgatatacaatttatcaatctaatggtcatt |
27565813 |
T |
|
| Q |
526 |
t |
526 |
Q |
| |
|
| |
|
|
| T |
27565814 |
t |
27565814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 27413423 - 27413358
Alignment:
| Q |
80 |
ctactaagtactaaccattcaactctttaaataaggatatcctaacagggaccatggaatgaggcc |
145 |
Q |
| |
|
||||| |||| ||||||||||| |||| | ||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
27413423 |
ctactcagtaataaccattcaattcttaagataaggatatcctaacaggaaccatagaatgaggcc |
27413358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 493
Target Start/End: Complemental strand, 27416005 - 27415940
Alignment:
| Q |
428 |
aagtgcgataaaccaaaaacgtagaagagctgcttgagtagttgaattcattctcattaaacaaaa |
493 |
Q |
| |
|
|||||| |||||||||||| ||||| |||||||||||||||| |||||| || ||| ||||||||| |
|
|
| T |
27416005 |
aagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaa |
27415940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 488
Target Start/End: Complemental strand, 27423637 - 27423534
Alignment:
| Q |
376 |
tagcaaacaacattactcatatagtcgtatttcataagtttataagttcattaagtgcgataaaccaaaaacgtagaagagctgcttgagtagttgaatt |
475 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| | | ||| || ||||||||| ||||| |
|
|
| T |
27423637 |
tagcaagcaacattactcatatagtcatatttcataagttt---------ttaagtgcaataaaccaaaaacacaaaggagatgtttgagtagtcgaatt |
27423547 |
T |
|
| Q |
476 |
cattctcattaaa |
488 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
27423546 |
cattgtcattaaa |
27423534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 501
Target Start/End: Complemental strand, 27413115 - 27412970
Alignment:
| Q |
349 |
ttcagaatacaaagt-attttttccttttagcaaacaacattactcatatagtcgtatttcataagtttataagttcattaagtgcgataaaccaaaaac |
447 |
Q |
| |
|
|||||||||| |||| ||||||| || |||||| ||| ||||||||||||||| |||||| ||||||| ||||| || ||||||||||||| |
|
|
| T |
27413115 |
ttcagaataccaagtcattttttaattatagcaagcaatattactcatatagtcctatttcttaagtttctaagtgca---------ataaaccaaaaac |
27413025 |
T |
|
| Q |
448 |
gtagaagagctgcttgagtagttgaattcattctcatta-aacaaaacatattta |
501 |
Q |
| |
|
|||||||| | ||||| |||| |||||| || |||||| ||||||| ||||||| |
|
|
| T |
27413024 |
atagaagagttacttgaatagtcgaattcgttttcattataacaaaaaatattta |
27412970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 500
Target Start/End: Original strand, 27569811 - 27569885
Alignment:
| Q |
426 |
ttaagtgcgataaaccaaaaacgtagaagagctgcttgagtagttgaattcattctcattaaacaaaacatattt |
500 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||| | ||||||||| ||||||||| ||||||||||||| |||||| |
|
|
| T |
27569811 |
ttaagtgcaataaaccaaaaacagagaggagatatttgagtagtcgaattcattgtcattaaacaaaatatattt |
27569885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 27565598 - 27565640
Alignment:
| Q |
148 |
tgtcattcagtgaaataattgaccttgttactgaattgttatt |
190 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
27565598 |
tgtcattcagtaaaatagtttaccttgttactgaattgttatt |
27565640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University