View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16387_high_3 (Length: 460)
Name: NF16387_high_3
Description: NF16387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16387_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 17898529 - 17898969
Alignment:
| Q |
1 |
aatgagcttttgaagctctttaggaggtgtcagaattcaaagagaaactaaaatttgctaaccaatt--------tattgccttctcgtcaactgtgaat |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
17898529 |
aatgagcttttgaagctctttaggaggtgtcaaaattcaaagagaaactaaaatttgctaaccaatcagcacatctattgcctttgcgtcaagtgtgaat |
17898628 |
T |
|
| Q |
93 |
aacatgtatgctagctttgctgaaaaagctgtggaatatgtcgaatcaatgaaggggtggttccgttgatcttgcaatgtttggtaaccatgtcaatacg |
192 |
Q |
| |
|
||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17898629 |
aacatgtatgccagtttcgctgaaaaagctgtggaatatgtcgaatcaatgaaggg-tggttccattgatcttgcaatgtttggtaaccatgtcaataaa |
17898727 |
T |
|
| Q |
193 |
cactttcgagtctttttcaataattaggtgagatagaccttcttttcaagccatatcaagtctcagatatggaccctgcatctttgcatgaaattcatca |
292 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17898728 |
cactttcgagtcattttcaacaattagatgagatagaccttcttttcaagccatatcaagtctcagatatggaccctgcatctttgcatgaaatgcatca |
17898827 |
T |
|
| Q |
293 |
caagtttcaattttttcgattaaatcctttaagccatagagaccatatgaatggcgaagaagccttccacatcctgcgatctttctattgcttttagaat |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
17898828 |
caagtttcaattttttcgattaaatcctttaagccatagagaccatatgaatgacgaagaagccttccacatcctgcaatctttctattgcttttacaat |
17898927 |
T |
|
| Q |
393 |
ctctgtcacaattaagcttcacccaattatcatttggtctct |
434 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17898928 |
ctctgtcacgattaagcttcacccaattatcatttggtctct |
17898969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 252
Target Start/End: Original strand, 42161152 - 42161278
Alignment:
| Q |
126 |
gaatatgtcgaatcaatgaaggggtggttccgttgatcttgcaatgtttggtaaccatgtcaatacgcactttcgagtctttttcaataattaggtgaga |
225 |
Q |
| |
|
||||| |||||| || |||||| ||||||| ||||||||||||| || |||||||| |||||| ||||||| ||||| | |||| ||| | |||||| |
|
|
| T |
42161152 |
gaatacgtcgaaccagagaagggatggttccattgatcttgcaattgttagtaaccatatcaataagcacttttgagtcactctcaacaatcacgtgaga |
42161251 |
T |
|
| Q |
226 |
tagaccttcttttcaagccatatcaag |
252 |
Q |
| |
|
|| ||| || | |||||||||||||| |
|
|
| T |
42161252 |
taaaccctcactccaagccatatcaag |
42161278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 134 - 261
Target Start/End: Complemental strand, 43691721 - 43691594
Alignment:
| Q |
134 |
cgaatcaatgaaggggtggttccgttgatcttgcaatgtttggtaaccatgtcaatacgcactttcgagtctttttcaataattaggtgagatagacctt |
233 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||||| |||||| ||||| || ||| |||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
43691721 |
cgaatcaaggaaggggtagttcctttgatcttgcaatttttggtgaccatatctataaacactttcgagtcactttcaacaattaggtgagatagacctt |
43691622 |
T |
|
| Q |
234 |
cttttcaagccatatcaagtctcagata |
261 |
Q |
| |
|
|| |||||||||||| ||||| |||||| |
|
|
| T |
43691621 |
ctcttcaagccatatgaagtcccagata |
43691594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 20670192 - 20670300
Alignment:
| Q |
143 |
gaaggggtggttccgttgatcttgcaatgtttggtaaccatgtcaatacgcactttcgagtctttttcaataattaggtgagatagaccttcttttcaag |
242 |
Q |
| |
|
|||||| ||||||| ||||||||||||| || |||||||| |||||| | ||||| ||||| | |||| ||| | |||||||| ||| || | |||| |
|
|
| T |
20670192 |
gaagggatggttccattgatcttgcaattgttagtaaccatatcaataagaacttttgagtcactctcaacaatcacgtgagataaaccctcactccaag |
20670291 |
T |
|
| Q |
243 |
ccatatcaa |
251 |
Q |
| |
|
||||||||| |
|
|
| T |
20670292 |
ccatatcaa |
20670300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University