View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16387_high_6 (Length: 283)

Name: NF16387_high_6
Description: NF16387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16387_high_6
NF16387_high_6
[»] chr8 (10 HSPs)
chr8 (11-268)||(7321476-7321732)
chr8 (11-259)||(29757601-29757850)
chr8 (11-263)||(29771751-29772003)
chr8 (11-168)||(19008097-19008253)
chr8 (15-128)||(18528145-18528258)
chr8 (15-128)||(28800877-28800990)
chr8 (70-171)||(18565067-18565165)
chr8 (95-161)||(23521116-23521181)
chr8 (107-171)||(24308893-24308960)
chr8 (96-161)||(26576508-26576572)
[»] chr1 (13 HSPs)
chr1 (8-265)||(31584370-31584628)
chr1 (21-258)||(25791520-25791758)
chr1 (11-265)||(15440500-15440747)
chr1 (20-268)||(14580718-14580968)
chr1 (20-116)||(41029232-41029328)
chr1 (11-132)||(16636981-16637102)
chr1 (11-88)||(34187881-34187958)
chr1 (96-189)||(17316524-17316617)
chr1 (67-171)||(12397699-12397805)
chr1 (95-159)||(17496785-17496850)
chr1 (96-159)||(30805983-30806047)
chr1 (110-171)||(26897941-26898004)
chr1 (110-171)||(33438813-33438876)
[»] chr3 (8 HSPs)
chr3 (11-268)||(8109510-8109767)
chr3 (11-171)||(17034507-17034667)
chr3 (96-160)||(19905645-19905708)
chr3 (89-171)||(19307068-19307152)
chr3 (11-89)||(27406004-27406082)
chr3 (11-128)||(5638770-5638887)
chr3 (101-171)||(5699788-5699858)
chr3 (96-161)||(13291831-13291897)
[»] chr6 (9 HSPs)
chr6 (15-171)||(6561056-6561212)
chr6 (21-106)||(11130809-11130895)
chr6 (12-171)||(17291451-17291610)
chr6 (67-171)||(29031880-29031983)
chr6 (95-171)||(10814926-10815003)
chr6 (107-174)||(10821010-10821079)
chr6 (95-189)||(4312245-4312339)
chr6 (110-159)||(19490838-19490889)
chr6 (107-159)||(21746959-21747011)
[»] chr7 (5 HSPs)
chr7 (11-161)||(8259273-8259423)
chr7 (96-171)||(17891497-17891573)
chr7 (11-77)||(4031518-4031584)
chr7 (11-77)||(24865386-24865452)
chr7 (95-161)||(27707462-27707529)
[»] chr5 (8 HSPs)
chr5 (22-171)||(19642072-19642221)
chr5 (11-171)||(31730435-31730595)
chr5 (11-142)||(20690016-20690147)
chr5 (23-268)||(17338135-17338381)
chr5 (11-171)||(25936275-25936434)
chr5 (11-125)||(19692420-19692534)
chr5 (95-168)||(26013611-26013685)
chr5 (95-171)||(37336518-37336595)
[»] chr4 (4 HSPs)
chr4 (49-171)||(20245262-20245383)
chr4 (107-159)||(18445832-18445886)
chr4 (121-237)||(17474270-17474388)
chr4 (137-174)||(47575579-47575616)
[»] chr2 (6 HSPs)
chr2 (16-157)||(13073564-13073705)
chr2 (11-268)||(22268483-22268739)
chr2 (197-265)||(19878303-19878371)
chr2 (107-171)||(42256169-42256233)
chr2 (11-60)||(17569585-17569634)
chr2 (95-160)||(27765746-27765812)
[»] scaffold0804 (1 HSPs)
scaffold0804 (20-268)||(435-685)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 7321476 - 7321732
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  7321476 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcatgcaacattccaacatcttgatttgattgct 7321575  T
Q  111 tctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataaaaaagttaaagacttgaaacatatcaagactctgcaatt 210  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  7321576 tctcaaggactcttaatacgctgacacttctccaacgtctctcaaatccttccttatat-aagaagttaaagacttgaaacataacaagactctgcaatt 7321674  T
Q  211 ttaacttgggcccttactttgtcaaattttgaagcgcataaacacttaagaatttctt 268  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7321675 ttaacttgggcccttactttgtcaaattttgaagtgcataaacacttaagaatttctt 7321732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 29757601 - 29757850
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagct 110  Q
    ||||||||| ||||||||||||||||| || ||||| |||||||||||||||||  ||||||||||||| |||| |||||||| |||| ||||||||| |    
T  29757601 aatgaaacatataattctatttgcagccatggatttcgaatgtcttttcaaatgacattaaccatatcaggcaaaattccaacgtctttatttgataggt 29757700  T
Q  111 tctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataaaaaagttaaagacttga--aacatatcaagactctgcaa 208  Q
    |||||| |||||||||||| || | |||||||||||||||||||||||||||  ||||| ||  || | |||||||||  |||| | ||||||||| |||    
T  29757701 tctcaatgactcttaatgcactgatacttctccaacgtctctcaaatccttctctatat-aaggagatcaagacttgaagaacacaacaagactcttcaa 29757799  T
Q  209 ttttaacttgggcccttactttgtcaaattttgaagcgcataaacacttaa 259  Q
     ||||||||| ||||||||| | ||||||||  |||| |||||| ||||||    
T  29757800 ctttaacttgtgcccttactctatcaaatttaaaagcacataaatacttaa 29757850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 29771751 - 29772003
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagct 110  Q
    ||||||||||||||||||| |||||||||| | |||   |||||||||||||    |||||||||| || ||||||||||||| |||||||||||||| |    
T  29771751 aatgaaacagataattctacttgcagcaatgggtttcagatgtcttttcaaacaacattaaccataccaggcaacattccaacgtcttgatttgataggt 29771850  T
Q  111 tctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataaaaaagttaaagacttga--aacatatcaagactctgcaa 208  Q
    ||||||| ||||||||||| || ||| |||||||||||||||||||| ||||  ||||| ||  || | |||||||||  |||| | ||||||||| |||    
T  29771851 tctcaagaactcttaatgcactgacatttctccaacgtctctcaaatacttctctatat-aaggagatgaagacttgaagaacacaacaagactcttcaa 29771949  T
Q  209 ttttaacttgggcccttactttgtcaaattttgaagcgcataaacacttaagaat 263  Q
    |||||||||| | ||||||| ||||||||||  |||||| |||||||||||||||    
T  29771950 ttttaacttgtg-ccttactctgtcaaatttaaaagcgcgtaaacacttaagaat 29772003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 19008253 - 19008097
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaac-atcttgatttgatagc 109  Q
    ||||||||| ||||||||||||||| | ||  |||| |||||||| || |||||  ||||| ||||||| ||||||||||||| |  ||||||||| | |    
T  19008253 aatgaaacaaataattctatttgcaaccatgaatttcgaatgtctcttaaaatgacattaatcatatcaggcaacattccaacgactttgatttga-aac 19008155  T
Q  110 ttctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatccttccttata 168  Q
    ||||||| || |||||||||||| | || ||||||||||||||||||||||| ||||||    
T  19008154 ttctcaacgaatcttaatgcgctgaaac-tctccaacgtctctcaaatccttacttata 19008097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 18528145 - 18528258
Alignment:
Q  15 aaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatc-ttgatttgatagcttct 113  Q
    ||||||||||||||||| | || | | ||||| |||||||||||||||||| ||||| ||| ||| | ||||||||||| || |||||||||| ||||||    
T  18528145 aaacagataattctattagtaggagtggatttcgaatgtcttttcaaatggcattaatcatgtcaggaaacattccaacgtctttgatttgat-gcttct 18528243  T
Q  114 caaggactcttaatg 128  Q
    ||| |||||||||||    
T  18528244 caaagactcttaatg 18528258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 28800877 - 28800990
Alignment:
Q  15 aaacagataattctatttgcagcaatagattttgaa-tgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagcttct 113  Q
    ||||||||||||||| ||||| |||| |||||| || ||||||||||||    |||||||||||||  |||||||||||| ||||||||||| | |||||    
T  28800877 aaacagataattctaattgcaacaat-gattttcaaatgtcttttcaaacaacattaaccatatcagacaacattccaacgtcttgatttgaaaacttct 28800975  T
Q  114 caaggactcttaatg 128  Q
    ||| |||||||||||    
T  28800976 caaagactcttaatg 28800990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 18565165 - 18565067
Alignment:
Q  70 aaccatatcacgcaacattccaacatc-ttgatttgatagcttctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatccttccttata 168  Q
    ||||||||||  ||||||||||||||| || ||||||| | ||||||| ||||||||||||  || |||| ||||||| |||||||||||||| | ||||    
T  18565165 aaccatatcatacaacattccaacatcctttatttgat-gtttctcaacgactcttaatgc--tagcact-ctccaacatctctcaaatccttgcctata 18565070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 23521116 - 23521181
Alignment:
Q  95 tcttgatttgatagcttctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatcctt 161  Q
    ||||||||||| | |||| ||| ||||||||||||||| |||| ||| |||||||||| ||||||||    
T  23521116 tcttgatttgaaa-cttcccaacgactcttaatgcgctgacacctcttcaacgtctcttaaatcctt 23521181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 24308893 - 24308960
Alignment:
Q  107 agcttctcaaggactcttaatgcgctaacact---tctccaacgtctctcaaatccttccttatataa 171  Q
    ||||||||||||||||| | |||||| ||| |   ||||||||||||||||||||||| | |||||||    
T  24308893 agcttctcaaggactctaattgcgctgacattggttctccaacgtctctcaaatccttgcctatataa 24308960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 26576572 - 26576508
Alignment:
Q  96 cttgatttgatagcttctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatcctt 161  Q
    |||||||||| |||||||||| |||||||||||||||   || |||  ||||||||||||||||||    
T  26576572 cttgatttga-agcttctcaacgactcttaatgcgctggaacctctgtaacgtctctcaaatcctt 26576508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 265
Target Start/End: Original strand, 31584370 - 31584628
Alignment:
Q  8 tgaaatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgata 107  Q
    ||||||||||| ||| ||||||||||||||||||||||| |||||||||||| || |  ||||||| |||||  ||||||||||||||||||||||||||    
T  31584370 tgaaatgaaacggatgattctatttgcagcaatagatttcgaatgtcttttcgaacgacattaaccgtatcagacaacattccaacatcttgatttgata 31584469  T
Q  108 gcttctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataaaaaagttaaagacttga--aacatatcaagactctg 205  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || || | |||||||  ||  | |||||||||  |||    ||||||| |     
T  31584470 gcttctcaaggactcttaatgcgctgacacttctccaacgtctctcaattcattgcatatataaggaa-ctgaagacttgaagaactctacaagactttc 31584568  T
Q  206 caattttaacttgggcccttactttgtcaaattttgaagcgcataaacacttaagaattt 265  Q
     |||||||||||| | || |||| | |||||||   ||||||||||||||||||||||||    
T  31584569 taattttaacttgtgtccgtactctatcaaattcaaaagcgcataaacacttaagaattt 31584628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 21 - 258
Target Start/End: Original strand, 25791520 - 25791758
Alignment:
Q  21 ataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagcttctcaaggac 120  Q
    |||||||||||||| | ||||||||| |||||||||||||||    ||||| ||||||| |||| |||||||| ||||||||||||||||||||||||||    
T  25791520 ataattctatttgctgtaatagatttcgaatgtcttttcaaacaacattaatcatatcaggcaatattccaacgtcttgatttgatagcttctcaaggac 25791619  T
Q  121 tcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataaaaaagttaaagacttga--aacatatcaagactctgcaattttaacttg 218  Q
    |||||||| | | |||||| ||||||||||||||||||| | | ||||| || ||||| |||||||||  |||  |  ||||||||  ||||||||||||    
T  25791620 tcttaatgagttgacacttttccaacgtctctcaaatccatgcctatat-aagaagttgaagacttgaagaactaaataagactctataattttaacttg 25791718  T
Q  219 ggcccttactttgtcaaattttgaagcgcataaacactta 258  Q
     ||| ||||||||| |||||   ||||||| |||||||||    
T  25791719 tgcctttactttgtgaaattcaaaagcgcaaaaacactta 25791758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 15440747 - 15440500
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagct 110  Q
    |||||||||||||||||||||||||||||| || || | ||||||||||||| |  || ||||         ||||||||||||||||||||||||||||    
T  15440747 aatgaaacagataattctatttgcagcaatggacttggtatgtcttttcaaaagacatcaaccg--------aacattccaacatcttgatttgatagct 15440656  T
Q  111 tctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataaaaaagttaaagacttga--aacatatcaagactctgcaa 208  Q
    |||||| |||||||||||| || |||||||||||| |||||||||||| || | ||||| ||  || | |||||||||  |||| |  |||||| ||| |    
T  15440655 tctcaaagactcttaatgcactgacacttctccaatgtctctcaaatctttgcctatat-aaggagctgaagacttgaagaacacaataagactttgcta 15440557  T
Q  209 ttttaacttgggcccttactttgtcaaattttgaagcgcataaacacttaagaattt 265  Q
    |||||||| | || |||| | ||||||| |||  ||||| |||||||||||||||||    
T  15440556 ttttaactagtgctcttattctgtcaaaatttatagcgcgtaaacacttaagaattt 15440500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 14580718 - 14580968
Alignment:
Q  20 gataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatc-ttgatttgatagcttctcaagg 118  Q
    ||||||||||||| |  |||| ||||| |||||||  |||||| |   |||||||||||| |||||||| |||| || ||||||||| || |||||||      
T  14580718 gataattctatttccgtcaatggatttcgaatgtcccttcaaacgacgttaaccatatcaggcaacatttcaacgtctttgatttga-agtttctcaaca 14580816  T
Q  119 actcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataaaaaagttaaagacttgaaacatat---caagactctgcaattttaac 215  Q
    |||||||||||||| |||| |||||||||||||| |||||||| | ||||| ||  || ||||||||| ||  ||||   ||||| |||||||||||||     
T  14580817 actcttaatgcgctgacac-tctccaacgtctctaaaatccttgcatatat-aaggagctaaagacttaaagaatatgaacaagaatctgcaattttaa- 14580913  T
Q  216 ttgggcccttactttgtcaaattttgaagcgcat--aaacacttaagaatttctt 268  Q
    ||| ||||||||| |||||||||   ||||||||  |||||||||||||||||||    
T  14580914 ttgtgcccttactctgtcaaattcaaaagcgcataaaaacacttaagaatttctt 14580968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 41029328 - 41029232
Alignment:
Q  20 gataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagcttctcaa 116  Q
    ||||||||||||||||||||| |||||  |||||||||||||| |  ||||||||||| | | ||||||||||| |||||||||||||| |||||||    
T  41029328 gataattctatttgcagcaatggatttgaaatgtcttttcaaacgacattaaccatataaggtaacattccaacgtcttgatttgatagtttctcaa 41029232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 16637102 - 16636981
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatc-ttgatttgatagc 109  Q
    ||||||||  |||||||||||||||||||| |||||  |||||||||||||| |  |||||||||  || ||||||||||||  || |||||||||| |     
T  16637102 aatgaaacgaataattctatttgcagcaatggatttcaaatgtcttttcaaacgacattaaccatgccaggcaacattccaatgtctttgatttgat-gt 16637004  T
Q  110 ttctcaaggactcttaatgcgct 132  Q
    |||||||||||||||||||||||    
T  16637003 ttctcaaggactcttaatgcgct 16636981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 34187958 - 34187881
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacatt 88  Q
    ||||||||||||||||||| ||||||||||  |||||||||||||||||||| |  |||||| |||||| ||||||||    
T  34187958 aatgaaacagataattctaattgcagcaatgaattttgaatgtcttttcaaacgacattaactatatcatgcaacatt 34187881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 17316524 - 17316617
Alignment:
Q  96 cttgatttgatagcttctcaaggactcttaatgcgctaacact--tctccaacgtctctcaaatccttccttatataaaaaagttaaagacttgaa 189  Q
    |||||||||| || ||||||| ||||||||||||||| |||||  ||||||||||||||||||||||| | ||||| || ||||| ||||||||||    
T  17316524 cttgatttga-agattctcaacgactcttaatgcgctgacactcttctccaacgtctctcaaatccttgcctatat-aagaagttgaagacttgaa 17316617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 12397805 - 12397699
Alignment:
Q  67 attaaccatatcacgcaacattccaacatc-ttgatttgatagcttctcaaggactcttaatgcgctaacact--tctccaacgtctctcaaatccttcc 163  Q
    |||| |||||||| ||||   ||||||||| ||||||||| | |||||||| ||||||||||||  |||||||  ||| ||||||||||||||||||| |    
T  12397805 attatccatatcaggcaatgatccaacatccttgatttgaaa-cttctcaacgactcttaatgcattaacactcttcttcaacgtctctcaaatccttgc 12397707  T
Q  164 ttatataa 171  Q
     |||||||    
T  12397706 ctatataa 12397699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 17496785 - 17496850
Alignment:
Q  95 tcttgatttgatagcttctcaaggactcttaatgcgctaaca--cttctccaacgtctctcaaatcc 159  Q
    ||||||||||| ||||| |||| ||||||||||||||| |||  ||||||||| |||||||||||||    
T  17496785 tcttgatttga-agcttttcaacgactcttaatgcgctgacactcttctccaatgtctctcaaatcc 17496850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 30805983 - 30806047
Alignment:
Q  96 cttgatttgatagcttctcaaggactcttaatgcgctaacac--ttctccaacgtctctcaaatcc 159  Q
    |||||||||| |||||||||| ||||||||||||||| ||||  ||||| ||||| ||||||||||    
T  30805983 cttgatttga-agcttctcaacgactcttaatgcgctgacactattctcaaacgtatctcaaatcc 30806047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 26898004 - 26897941
Alignment:
Q  110 ttctcaaggactcttaatgcgctaacac--ttctccaacgtctctcaaatccttccttatataa 171  Q
    ||||||| ||||||||||||| | ||||  |||| ||||||||||||||||||| | |||||||    
T  26898004 ttctcaacgactcttaatgcgttgacacgcttcttcaacgtctctcaaatccttgcctatataa 26897941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 33438876 - 33438813
Alignment:
Q  110 ttctcaaggactcttaatgcgctaacact--tctccaacgtctctcaaatccttccttatataa 171  Q
    ||||||| || |||||||||||| |||||  ||||||||||||||| |||| || |||||||||    
T  33438876 ttctcaacgattcttaatgcgctgacactcttctccaacgtctctctaatctttgcttatataa 33438813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 8109767 - 8109510
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagct 110  Q
    |||||||| ||||||| ||||||||| ||| |||||  ||||||||||||||||| ||||||||||| | |||||||||| || ||||||||||| ||||    
T  8109767 aatgaaacggataattatatttgcaggaatggatttcaaatgtcttttcaaatggcattaaccatattaggcaacattcctacgtcttgatttgaaagct 8109668  T
Q  111 tctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataaaaaagttaaagacttga--aacatatcaagactctgcaa 208  Q
    |||||| |||| |||||| | |  ||| ||||||||||||||||||||||||  |||| |||| ||||||| ||||||  |||| | |||||||||| ||    
T  8109667 tctcaaagactgttaatgtgttggcac-tctccaacgtctctcaaatccttctctata-aaaagagttaaatacttgaagaacaaaacaagactctgtaa 8109570  T
Q  209 ttttaacttgggcccttactttgtcaaattttgaagcgcataaacacttaagaatttctt 268  Q
    |||||||||| ||   |||| ||||||||||  ||| ||||||||| |||||||| ||||    
T  8109569 ttttaacttgtgcatgtactctgtcaaatttaaaagtgcataaacagttaagaatctctt 8109510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 17034507 - 17034667
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatct-tgatttgatagc 109  Q
    ||||||||||||||||||| ||||||||||  ||||||||| ||| | | || |  ||||||||||||| ||||||||||||| ||| ||||| || |||    
T  17034507 aatgaaacagataattctacttgcagcaatgaattttgaatatctctaccaacgacattaaccatatcaggcaacattccaacgtctatgattcga-agc 17034605  T
Q  110 ttctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataa 171  Q
    ||||||| ||||||||||||| |  ||| ||||||||||||||||||||||| | |||||||    
T  17034606 ttctcaacgactcttaatgcgttgtcacctctccaacgtctctcaaatccttgcctatataa 17034667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 19905708 - 19905645
Alignment:
Q  96 cttgatttgatagcttctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatcct 160  Q
    |||||||||| | |||||||| |||||||||||||||  ||| ||||||||||||||||||||||    
T  19905708 cttgatttgaaa-cttctcaacgactcttaatgcgctggcacctctccaacgtctctcaaatcct 19905645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 19307068 - 19307152
Alignment:
Q  89 ccaacatctt-gatttgatagcttctcaaggactcttaatgcgctaacact--tctccaacgtctctcaaatccttccttatataa 171  Q
    |||||||||| ||||||| |||||||||| |||||||||||| || |||||  |||||| |||||||||||||||| | |||||||    
T  19307068 ccaacatctttgatttga-agcttctcaatgactcttaatgcactgacactcttctccagcgtctctcaaatccttgcctatataa 19307152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 27406004 - 27406082
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattc 89  Q
    |||||||||||||||||||||||||| ||| | ||| |||||||| |||||| |  ||| |||||||||  ||||||||    
T  27406004 aatgaaacagataattctatttgcagaaatggctttcgaatgtctcttcaaacgacattcaccatatcagacaacattc 27406082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 5638770 - 5638887
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaa-tgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagc 109  Q
    ||||||| ||||||| |||||||||| ||| |||||| || |||| ||||||| |  |||||  |||||   ||| |||||||| ||||| ||||| | |    
T  5638770 aatgaaatagataatcctatttgcagaaat-gattttcaaatgtcatttcaaacgacattaattatatccaacaatattccaacgtcttggtttgaaatc 5638868  T
Q  110 ttctcaaggactcttaatg 128  Q
    |||||||||||||||||||    
T  5638869 ttctcaaggactcttaatg 5638887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 5699788 - 5699858
Alignment:
Q  101 tttgatagcttctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataa 171  Q
    ||||| |||||||||||||||||||||| | |   || ||||||||||||||||| ||||||  |||||||    
T  5699788 tttgaaagcttctcaaggactcttaatgtgttggaacctctccaacgtctctcaattccttcactatataa 5699858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 13291831 - 13291897
Alignment:
Q  96 cttgatttgatagcttctcaaggactcttaatgcgctaacact--tctccaacgtctctcaaatcctt 161  Q
    |||||||||| | |||||||| || |||||||||| | |||||  |||||||||||||||||||||||    
T  13291831 cttgatttgaaa-cttctcaacgattcttaatgcgttgacactcttctccaacgtctctcaaatcctt 13291897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 6561056 - 6561212
Alignment:
Q  15 aaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagcttctc 114  Q
    |||| ||||||| |||||||| || |  ||||  |||||||||||||| |  ||||||||||||| ||||||||||||| |||||||||| |||||||||    
T  6561056 aaacggataattatatttgcatcattgaatttaaaatgtcttttcaaacgacattaaccatatcatgcaacattccaacgtcttgatttggtagcttctc 6561155  T
Q  115 aaggactcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataa 171  Q
    || ||||||||||||||||||| |||||||| ||||||| |||| || | |||||||    
T  6561156 aaagactcttaatgcgctaacatttctccaatgtctctcgaatcatttcctatataa 6561212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 11130895 - 11130809
Alignment:
Q  21 ataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatc-ttgatttgat 106  Q
    ||||||||||||||| ||||||||||||||||||||| |||| |  |||||  |||||| ||||||||||||| || ||||||||||    
T  11130895 ataattctatttgcatcaatagattttgaatgtctttccaaacgacattaaagatatcatgcaacattccaacgtctttgatttgat 11130809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 17291610 - 17291451
Alignment:
Q  12 atgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatctt-gatttgatagct 110  Q
    |||||||||||| |||||||||||| | |  ||||  ||||| ||||||||    ||||| ||||||| ||||||||||||  |||| |||||||| |||    
T  17291610 atgaaacagatatttctatttgcagaattgaatttcaaatgtattttcaaacaaaattaatcatatcaggcaacattccaatgtctttgatttgat-gct 17291512  T
Q  111 tctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataa 171  Q
    |||||| ||||||||||||  |   || ||||||||||||||||||| ||| | |||||||    
T  17291511 tctcaacgactcttaatgcattggaacctctccaacgtctctcaaattctttcctatataa 17291451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 29031983 - 29031880
Alignment:
Q  67 attaaccatatcacgcaacattccaacatctt-gatttgatagcttctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatccttcctt 165  Q
    ||||||||||||| |||||||| |||  |||| ||||||| ||||||| || ||||||||||||||| | ||| ||||||| |||||||||||||| | |    
T  29031983 attaaccatatcatgcaacatttcaatgtctttgatttga-agcttctgaacgactcttaatgcgctgatact-ctccaacatctctcaaatcctttcct 29031886  T
Q  166 atataa 171  Q
    ||||||    
T  29031885 atataa 29031880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 10814926 - 10815003
Alignment:
Q  95 tcttgatttgatagcttctcaaggactcttaatgcgctaaca--cttctccaacgtctctcaaatccttccttatataa 171  Q
    ||||||||||| |||||||||| |||||||||| || | |||  |||||||||| |||||||||||||| | |||||||    
T  10814926 tcttgatttga-agcttctcaatgactcttaatacgttgacattcttctccaacatctctcaaatccttgcatatataa 10815003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 10821079 - 10821010
Alignment:
Q  107 agcttctcaaggactcttaatgcgctaacact--tctccaacgtctctcaaatccttccttatataaaaa 174  Q
    ||||| |||| ||||||||||||||| |||||  ||||| |||||||||||||| || | ||||||||||    
T  10821079 agcttttcaatgactcttaatgcgctgacactcttctccgacgtctctcaaatctttgcctatataaaaa 10821010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 4312339 - 4312245
Alignment:
Q  95 tcttgatttgatagcttctcaaggactcttaatgcgctaaca--cttctccaacgtctctcaaatccttccttatataaaaaagttaaagacttgaa 189  Q
    ||||||||||| ||||||||||  | ||||| |||||| |||  || |||||||||||||||||||||| | ||||| ||| |||| ||||||||||    
T  4312339 tcttgatttga-agcttctcaataagtcttactgcgctgacattctactccaacgtctctcaaatccttgcctatat-aaagagttgaagacttgaa 4312245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 19490889 - 19490838
Alignment:
Q  110 ttctcaaggactcttaatgcgctaacacttctc--caacgtctctcaaatcc 159  Q
    ||||||| |||||||||||||||  ||||||||  |||||||||||||||||    
T  19490889 ttctcaatgactcttaatgcgctggcacttctctgcaacgtctctcaaatcc 19490838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 21747011 - 21746959
Alignment:
Q  107 agcttctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatcc 159  Q
    ||||| |||| ||||||||||| ||| |||||||| |||||||| ||||||||    
T  21747011 agcttttcaacgactcttaatgtgctgacacttcttcaacgtctttcaaatcc 21746959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 8259423 - 8259273
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagct 110  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |  ||||||||||| |  ||||||| |||| ||||||||||||||||    
T  8259423 aatgaaacaaataattctatttgcagcaatggatttcgaatgtcttttcaaacgacattaaccatattagacaacatttcaacgtcttgatttgatagct 8259324  T
Q  111 tctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatcctt 161  Q
    ||| || ||||||||||||| |   ||||| | || |||||||||||||||    
T  8259323 tctgaaagactcttaatgcgttgggacttccctaatgtctctcaaatcctt 8259273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 17891497 - 17891573
Alignment:
Q  96 cttgatttgatagcttctcaaggactcttaatgcgctaacact--tctccaacgtctctcaaatccttccttatataa 171  Q
    |||||||||| |||||||||  ||||||||||||| | |||||  ||||||||||||||||||||||| |||||||||    
T  17891497 cttgatttga-agcttctcagtgactcttaatgcgttgacactcttctccaacgtctctcaaatccttgcttatataa 17891573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 4031518 - 4031584
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatat 77  Q
    ||||||||| |||||| ||||||||||||| ||||| |||||||| |||||| |  |||||||||||    
T  4031518 aatgaaacaaataattttatttgcagcaatggatttcgaatgtctcttcaaaagacattaaccatat 4031584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 24865452 - 24865386
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatat 77  Q
    ||||||||| ||| || |||||||| |||| |||||||||||||| |||||| |  |||||||||||    
T  24865452 aatgaaacaaatacttttatttgcaacaatggattttgaatgtctcttcaaacgacattaaccatat 24865386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 27707462 - 27707529
Alignment:
Q  95 tcttgatttgatagcttctcaaggactcttaatgcgctaacact--tctccaacgtctctcaaatcctt 161  Q
    ||||||||||| |||||||||| ||||||||||||   ||||||  ||||||||| |||||||||||||    
T  27707462 tcttgatttga-agcttctcaacgactcttaatgcatcaacactcttctccaacgactctcaaatcctt 27707529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 19642072 - 19642221
Alignment:
Q  22 taattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagcttctcaaggact 121  Q
    |||||| ||||||| |||| |||||  |||||||||||||| |  | ||||||||||| | |||||| |||| ||||||||||||||||||| ||  |||    
T  19642072 taattcaatttgcaacaatggatttcaaatgtcttttcaaacgacaataaccatatcaggaaacatttcaacgtcttgatttgatagcttctgaataact 19642171  T
Q  122 cttaatgcgctaacacttctccaacgtctctcaaatccttccttatataa 171  Q
    ||||||||||| ||||||||| ||||||||| |||| ||| |||||||||    
T  19642172 cttaatgcgctgacacttctctaacgtctctaaaattcttgcttatataa 19642221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 31730595 - 31730435
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatct-tgatttgatagc 109  Q
    |||||| | |||||||||| |||||||||| |||||  ||||||| | | || |  ||||||||||||| ||||||||||||| ||| |||||  | |||    
T  31730595 aatgaagcggataattctacttgcagcaatggatttcaaatgtctctaccaacgacattaaccatatcatgcaacattccaacctctatgattaaa-agc 31730497  T
Q  110 ttctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataa 171  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||||||| || | |||||||    
T  31730496 ttctcaacgactcttaatgcgctgacacctctccaacgtctctcaaatctttgcctatataa 31730435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 20690147 - 20690016
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagct 110  Q
    |||| |||| ||||||||| |||||| ||| | |||  |||||||||||||| |  |||||||||||||  |||||||||||||| ||||||||| ||||    
T  20690147 aatggaacaaataattctaattgcagaaatggttttcaaatgtcttttcaaacgacattaaccatatcagacaacattccaacattttgatttgaaagct 20690048  T
Q  111 tctcaaggactcttaatgcgctaacacttctc 142  Q
    |||||| ||||||||||| ||| |||| ||||    
T  20690047 tctcaaagactcttaatgtgctgacacctctc 20690016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 268
Target Start/End: Original strand, 17338135 - 17338381
Alignment:
Q  23 aattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagcttctcaaggactc 122  Q
    ||||||||||||| ||||| ||||| |||||||||||||| |  |||||  |||||| | |||||||||| ||||||||||||  |||||| || |||||    
T  17338135 aattctatttgcaacaataaattttaaatgtcttttcaaacgacattaataatatcaggaaacattccaatatcttgatttgaatgcttctaaaagactc 17338234  T
Q  123 ttaatgcgctaacacttctccaacgtctctcaaatccttccttatataaaaaagttaaagacttga--aacatatcaagactctgcaattttaacttggg 220  Q
    |||| || ||  |||||||||| | ||||| | || ||| | ||| | |   |||| |||||||||  |||| |  ||||||||||||| ||||| || |    
T  17338235 ttaacgcactgccacttctccagcatctctaatatacttgcgtatgt-atggagttgaagacttgaagaacacaataagactctgcaatattaacatgtg 17338333  T
Q  221 cccttactttgtcaaattttgaagcgcataaacacttaagaatttctt 268  Q
    |||||||  ||||||| ||    |||||||||||||||||||||||||    
T  17338334 cccttaccctgtcaaaattcatggcgcataaacacttaagaatttctt 17338381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 25936275 - 25936434
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatctt-gatttgatagc 109  Q
    ||||||||  ||||||||||| |||||||| |||||  ||||| ||||| ||    |||||||||||||  ||| |||| ||| |||| |||||||| ||    
T  25936275 aatgaaacgaataattctattggcagcaatggatttcaaatgttttttctaacaacattaaccatatcatacaa-attctaacgtctttgatttgat-gc 25936372  T
Q  110 ttctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataa 171  Q
    ||||||||||||||||||||| |  ||| ||||||||||||||||||||||| | |||||||    
T  25936373 ttctcaaggactcttaatgcgttggcacctctccaacgtctctcaaatccttgcctatataa 25936434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 19692534 - 19692420
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagct 110  Q
    |||| |||| |||||| |||||||||||||   ||| ||||| | |||||||||  |||||||||||||  ||||||| |||| |||||||| |||||||    
T  19692534 aatggaacaaataattttatttgcagcaatgtttttggaatgacctttcaaatgacattaaccatatcagacaacatttcaacgtcttgattcgatagct 19692435  T
Q  111 tctcaaggactctta 125  Q
    |||||| | ||||||    
T  19692434 tctcaaaggctctta 19692420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 26013685 - 26013611
Alignment:
Q  95 tcttgatttgatagcttctcaaggactcttaatgcgctaacac--ttctccaacgtctctcaaatccttccttata 168  Q
    ||||||||||| |||||||||| |||||||||| |||| |||   ||||||||||||| |||||||||| ||||||    
T  26013685 tcttgatttga-agcttctcaatgactcttaatacgctgacatatttctccaacgtctttcaaatccttgcttata 26013611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 37336595 - 37336518
Alignment:
Q  95 tcttgatttgatagcttctcaaggactcttaatgcgctaac--acttctccaacgtctctcaaatccttccttatataa 171  Q
    ||||||||||| | |||||||| ||||||||||||||||||  | |||||||| || |||||||||||| | |||||||    
T  37336595 tcttgatttgaaa-cttctcaatgactcttaatgcgctaacatatttctccaatgtatctcaaatccttgcctatataa 37336518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 20245383 - 20245262
Alignment:
Q  49 aatgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagcttctcaaggactcttaatgcgctaacacttctccaacgt 148  Q
    |||||||||| |||||| |||||||||| ||  |||||||| ||| |||||||||||||||||||||||||||||||||||  |  || |||||||||||    
T  20245383 aatgtcttttaaaatggcattaaccataccagacaacattctaacgtcttgatttgatagcttctcaaggactcttaatgcattggca-ttctccaacgt 20245285  T
Q  149 ctctcaaatccttccttatataa 171  Q
    |||| ||||||||| ||||||||    
T  20245284 ctctaaaatccttctttatataa 20245262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 18445886 - 18445832
Alignment:
Q  107 agcttctcaaggactcttaatgcgctaacac--ttctccaacgtctctcaaatcc 159  Q
    |||||||||| ||||||||||||||| ||||  ||||||||||||||||||||||    
T  18445886 agcttctcaacgactcttaatgcgcttacactattctccaacgtctctcaaatcc 18445832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 17474270 - 17474388
Alignment:
Q  121 tcttaatgcgctaacact--tctccaacgtctctcaaatccttccttatataaaaaagttaaagacttga--aacatatcaagactctgcaattttaact 216  Q
    |||||||||||| |||||  ||| ||||||||||||||||||| | ||||| || ||| |||||||||||  || | | ||||||||||| ||||||||     
T  17474270 tcttaatgcgctgacactcttcttcaacgtctctcaaatccttgcctatat-aagaagctaaagacttgaagaataaaacaagactctgctattttaac- 17474367  T
Q  217 tgggcccttactttgtcaaat 237  Q
    || ||||||||| ||| ||||    
T  17474368 tgtgcccttactctgtaaaat 17474388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 47575616 - 47575579
Alignment:
Q  137 cttctccaacgtctctcaaatccttccttatataaaaa 174  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  47575616 cttctccaacttctctcaaatccttccctatataaaaa 47575579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 13073705 - 13073564
Alignment:
Q  16 aacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatc-ttgatttgatagcttctc 114  Q
    |||| ||||||  |||||||||||||||||| ||||||||||| |||||  |||||||||||||   ||||||||||| || |||||||||| | |||||    
T  13073705 aacaaataatttcatttgcagcaatagatttcgaatgtcttttaaaatgacattaaccatatcagataacattccaacgtctttgatttgat-gattctc 13073607  T
Q  115 aaggactcttaatgcgctaacacttctccaacgtctctcaaat 157  Q
    || ||||||||||||||| |||| |||| ||||||||||||||    
T  13073606 aacgactcttaatgcgctgacacctctctaacgtctctcaaat 13073564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 22268739 - 22268483
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatcttgatttgatagct 110  Q
    ||||||| | ||||||  |||||||  ||| ||||| ||||||||||||||| |  ||||| ||||||| |||| |||| ||||| ||||||||||||||    
T  22268739 aatgaaataaataattagatttgcaataatggatttcgaatgtcttttcaaacgacattaatcatatcatgcaagattcaaacat-ttgatttgatagct 22268641  T
Q  111 tctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataaaaaagttaaagacttg--aaacatatcaagactctgcaa 208  Q
    ||||| ||||||||||||| ||   ||||||| ||| |||||||||||||| | ||||| ||  || | || | |||  ||||| | ||||||||||  |    
T  22268640 tctcagggactcttaatgcactggaacttctcgaacatctctcaaatcctt-catatat-aaggagctgaatatttgaaaaacacaacaagactctgtta 22268543  T
Q  209 ttttaacttgggcccttactttgtcaaattttgaagcgcataaacacttaagaatttctt 268  Q
    |||| ||  ||||||||||||||||||| | |  ||||||||||||||||||| ||||||    
T  22268542 tttttacaagggcccttactttgtcaaaatctatagcgcataaacacttaagagtttctt 22268483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 19878303 - 19878371
Alignment:
Q  197 aagactctgcaattttaacttgggcccttactttgtcaaattttgaagcgcata-aacacttaagaattt 265  Q
    |||||||||||||||||| ||| ||||||||| |||||||||   ||||||||| |||||||||||||||    
T  19878303 aagactctgcaattttaa-ttgtgcccttactctgtcaaattcaaaagcgcatagaacacttaagaattt 19878371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 42256233 - 42256169
Alignment:
Q  107 agcttctcaaggactcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataa 171  Q
    |||||||||| || |||||||||| | |||||| |||||||||||||||||| || | |||||||    
T  42256233 agcttctcaacgaatcttaatgcgttgacacttgtccaacgtctctcaaatcattgcatatataa 42256169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 17569585 - 17569634
Alignment:
Q  11 aatgaaacagataattctatttgcagcaatagattttgaatgtcttttca 60  Q
    ||||||| || ||||||||||||||||||| | ||| |||||||||||||    
T  17569585 aatgaaataggtaattctatttgcagcaatgggtttcgaatgtcttttca 17569634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 27765746 - 27765812
Alignment:
Q  95 tcttgatttgatagcttctcaaggactcttaatgcgctaacact--tctccaacgtctctcaaatcct 160  Q
    ||||||||||| |||||||||| |||||||||| || | |||||  |||||||| |||||||||||||    
T  27765746 tcttgatttga-agcttctcaacgactcttaatacgatgacactcttctccaacatctctcaaatcct 27765812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 435 - 685
Alignment:
Q  20 gataattctatttgcagcaatagattttgaatgtcttttcaaatggtattaaccatatcacgcaacattccaacatc-ttgatttgatagcttctcaagg 118  Q
    ||||||||||||| |  |||| ||||| |||||||  |||||| |   |||||||||||| |||||||| |||| || ||||||||| || |||||||      
T  435 gataattctatttccgtcaatggatttcgaatgtcccttcaaacgacgttaaccatatcaggcaacatttcaacgtctttgatttga-agtttctcaaca 533  T
Q  119 actcttaatgcgctaacacttctccaacgtctctcaaatccttccttatataaaaaagttaaagacttgaaacatat---caagactctgcaattttaac 215  Q
    |||||||||||||| |||| |||||||||||||| |||||||| | ||||| ||  || ||||||||| ||  ||||   ||||| |||||||||||||     
T  534 actcttaatgcgctgacac-tctccaacgtctctaaaatccttgcatatat-aaggagctaaagacttaaagaatatgaacaagaatctgcaattttaa- 630  T
Q  216 ttgggcccttactttgtcaaattttgaagcgcat--aaacacttaagaatttctt 268  Q
    ||| ||||||||| |||||||||   ||||||||  |||||||||||||||||||    
T  631 ttgtgcccttactctgtcaaattcaaaagcgcataaaaacacttaagaatttctt 685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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