View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16387_high_9 (Length: 218)
Name: NF16387_high_9
Description: NF16387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16387_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 32430553 - 32430350
Alignment:
| Q |
1 |
aaacatataaacagaaaaattgtgtgaagaaattgtggttcatgttcaaggatagacagcaataacgatataataaaaataaaagtgaaactgcacccnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32430553 |
aaacatataaacagaaaaattgtgtgaagaaattgtggttcatgttcaaggatagacagcaataacaatataataaaaataaaagtgaaactgcaccc-- |
32430456 |
T |
|
| Q |
101 |
nnnnnnnnntgatagtgaaacaatgtta----nnnnnnnnnnacaagaaacaatgttatttttattacccaaaaaaatgatagtgacaatttttatgaat |
196 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32430455 |
--aaaaaaataatagtgaaacaatgttattttttatttttttacaagaaacaatgttatttttattacccaaaaaaatgatagtgacaatttttatgaat |
32430358 |
T |
|
| Q |
197 |
catactaa |
204 |
Q |
| |
|
|||||||| |
|
|
| T |
32430357 |
catactaa |
32430350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 52497794 - 52497755
Alignment:
| Q |
1 |
aaacatataaacagaaaaattgtgtgaagaaattgtggtt |
40 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
52497794 |
aaacatataaacagagaaattgtatgaagaaattgtggtt |
52497755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University