View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16387_low_4 (Length: 449)
Name: NF16387_low_4
Description: NF16387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16387_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 7 - 438
Target Start/End: Original strand, 8993099 - 8993526
Alignment:
| Q |
7 |
aaagggaaagttactggtggtggcacagaaaccaccagattttattatgtcattgtagctgttgtcgaaatagacacgggggcaattacacccataatgg |
106 |
Q |
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| T |
8993099 |
aaagggaaagttactggtggtggcacggaagccaccagatttgattatgtcattgcagctgttgtcgaaatagacacgggggcaattacacccataatgg |
8993198 |
T |
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| Q |
107 |
tcgaaactggcatgggagtagctagttactccaatagtagttgaaacattatcattcaatgtaggagtagatgcttaggtagattctgcatgtgaagatt |
206 |
Q |
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| T |
8993199 |
tcgaaactggcatgggagtag----ttactccaatagtagttgacacattatcattcaatgtaggagtggatgcttaggtagattgtggatgtgaagatt |
8993294 |
T |
|
| Q |
207 |
aagtgttactttgcgtagatgatgcagaagtaccactagtacgggacgagcaatttcattaaggattttgtcacttcttaaatacgtgaggaaaataact |
306 |
Q |
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| T |
8993295 |
aagtgttactttgtgtagatgatgcagaagtaccactagtacgggacgagcaatttcattaagggctttgtcacttcttaaatacatgaggaaaataact |
8993394 |
T |
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| Q |
307 |
agcagactaatggctaaaaactaaatcctttcgacatctttggcatgctttccacgtgtatggacatttaatcttgcctctttagagaatttgaatcttg |
406 |
Q |
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| T |
8993395 |
agcagactaatggctaaaaactaaatcctttcgacatctttggcatcctttccacgtgtatggacatttaatcttgcctcttcagagaatttgaatcttg |
8993494 |
T |
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| Q |
407 |
tattgtcaaaaatacacccttgtcgaatccca |
438 |
Q |
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| T |
8993495 |
tattgtcgaaaatacacccttgtcgaatccca |
8993526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 391
Target Start/End: Complemental strand, 41635327 - 41635233
Alignment:
| Q |
297 |
gaaaataactagcagactaatggctaaaaactaaatcctttcgacatctttggcatgctttccacgtgtatggacatttaatcttgcctctttag |
391 |
Q |
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| T |
41635327 |
gaaaataactaacaaactaacagctaaaaactaaatcttttcgacaactttagcttgttttccacgtgtctggaactttgatgttgcctctttag |
41635233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 385
Target Start/End: Complemental strand, 21166101 - 21166013
Alignment:
| Q |
297 |
gaaaataactagcagactaatggctaaaaactaaatcctttcgacatctttggcatgctttccacgtgtatggacatttaatcttgcct |
385 |
Q |
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| T |
21166101 |
gaaaataactaacagactaacggctaaaaactacatcttttcgacagctttaacatgccttcaatgtgttaggacatttgattttgcct |
21166013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 347
Target Start/End: Complemental strand, 21170722 - 21170672
Alignment:
| Q |
297 |
gaaaataactagcagactaatggctaaaaactaaatcctttcgacatcttt |
347 |
Q |
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| T |
21170722 |
gaaaataactaacagactaacggctaaaaactacatcttttcgacaacttt |
21170672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 364
Target Start/End: Complemental strand, 6470081 - 6470035
Alignment:
| Q |
318 |
ggctaaaaactaaatcctttcgacatctttggcatgctttccacgtg |
364 |
Q |
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| T |
6470081 |
ggctaaaaactaaatcttttcgacaactttgacttgctttccacgtg |
6470035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 402
Target Start/End: Original strand, 27662400 - 27662474
Alignment:
| Q |
325 |
aactaaatcctttcgacatctttggcatgctttccacgtgtatggacatttaatcttgcctcttta--gagaatttgaat |
402 |
Q |
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| T |
27662400 |
aactaaatcctttcgacaactttggcctgttttccacgtg-----acctttaatcttgcctcttcagtgagaatttgaat |
27662474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 388
Target Start/End: Original strand, 33054071 - 33054135
Alignment:
| Q |
324 |
aaactaaatcctttcgacatctttggcatgctttccacgtgtatggacatttaatcttgcctctt |
388 |
Q |
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| T |
33054071 |
aaactaaatcttttcgacaactttagcttgttttccacttgtctggacctttgatcttgcctctt |
33054135 |
T |
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