View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16387_low_5 (Length: 448)
Name: NF16387_low_5
Description: NF16387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16387_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 52512736 - 52512900
Alignment:
| Q |
13 |
agtatatatatcacttcatcttgagcaaagacaaatcaaaccctagtctagtcaaaatatatataattaagtatagtatatttctcaaacacagaaaaca |
112 |
Q |
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| T |
52512736 |
agtatatatatcactttatcttgagcaaagacaaatcaaaccctagtttagtcaaaatatatatatataagtatagtatatttcacaaacacagaaaaaa |
52512835 |
T |
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| Q |
113 |
tttatagaattattacaacaataaatgatcatctcgttaattctacatgatagagagttccacat |
177 |
Q |
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| T |
52512836 |
tttatagaattattacaacaataaatgatcatctagttaattctacaggatagagagttccacat |
52512900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 220 - 350
Target Start/End: Original strand, 52512957 - 52513087
Alignment:
| Q |
220 |
ttagcttcatgcatatatataggaaataattaaaactaagaagtgacttacaaagtgatgtttggggtccaagagtgggtggtggttcctccaacaactc |
319 |
Q |
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| T |
52512957 |
ttagcttcatgcatatatataggaaataattaaaactaagaagtgacttacaaagtgatgtttggggtccaagagtgggtggtggtggttcctccaactg |
52513056 |
T |
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| Q |
320 |
tataggatgtggtactggataaagaagaaac |
350 |
Q |
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| T |
52513057 |
tataggatggggtactggataaagaagaaac |
52513087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 432
Target Start/End: Original strand, 52513106 - 52513162
Alignment:
| Q |
375 |
ttggtcttggagatgatggagatttgtagattccataatgataaaaatttataattgc |
432 |
Q |
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| T |
52513106 |
ttggtcttggagatgatggagatttgtagattccataatgat-aaaatttataattgc |
52513162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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