View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16388_high_1 (Length: 611)
Name: NF16388_high_1
Description: NF16388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16388_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 6 - 596
Target Start/End: Complemental strand, 32643923 - 32643333
Alignment:
| Q |
6 |
agaagcaaaggcatattgagtgtgtgaattcgtgatgtggtacctcgtgttgcaatcataattttgcttttcaaaactatctgcaaaacatcattaaaaa |
105 |
Q |
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| T |
32643923 |
agaaccaaaggcatattgagtgtgtgaattcgtgatgtggtacctcgtgttgcaatcataattttgcttttcaaaactatctgcaaaacatcattaaaaa |
32643824 |
T |
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| Q |
106 |
ttcgagtgcatgtgttatttagaacattttttatgccggttattgccgtgtaccgtttcaagatgaacatctgaagagagatgtcctttttcacgagcct |
205 |
Q |
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| T |
32643823 |
ttcgagtgcatgtgttatttagaacattttttatgccggttattgccgtgtgccttttcaagatgaacatctgaagagagatgtcctttttcacgagcct |
32643724 |
T |
|
| Q |
206 |
tgtagtcaagggcaatccacccccaattgggatggcaggttcatcctttcccaaaatttgcaagcatgttacagcttcattcacaagagcattgataaca |
305 |
Q |
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| T |
32643723 |
tgtggtcaagggcaatccacccccaattgggatggcaggttcatcctttcccaaaatttgcaagcaagttacagcttcattcacaagagcattgataaca |
32643624 |
T |
|
| Q |
306 |
gtgccttgtagaactgttacttttgagacaaggttatggtacccaactttttcaagccaaagccagagagccatgactagaagagattgagtcacctcgt |
405 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32643623 |
gtgccttgtagaagtgttacttttgagacaaggttatggtacccaactttttcaagccaaagccagagagccatgactagaagagattgagtcacctcgt |
32643524 |
T |
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| Q |
406 |
ggtgaagtttgaagatcaaaaaacaaaatagctcacgatcaatttggtaaaaaatgttaagctcatcagtggtgataggagtctgtgtgacgaacaaaga |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32643523 |
ggtgaagtttgaagatcaaaaaacaaaatagctcacgatcaatttggtaaaaaaggttaagctcatcagtggtgataggagtctgtgtgacaaacaaagg |
32643424 |
T |
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| Q |
506 |
cctatccatgatgatgacaggttaaagggacgttagaagaaagtgagatgtggcgagttgtggttttatattagtaaaataccatatttat |
596 |
Q |
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| T |
32643423 |
cttatccatgatgatgacaggttaaagggacgttagaagaaagtgagatgtggcgagttatggttttatattagtaaaataccatatttat |
32643333 |
T |
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