View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16389_high_1 (Length: 658)
Name: NF16389_high_1
Description: NF16389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16389_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 566
Target Start/End: Original strand, 5557596 - 5558142
Alignment:
| Q |
16 |
tcaaaatcatcaaacttttggaggagaagcatgcaattgttatcatatgcacgcaaaatctctagtttgagaaagataaagaaagctaaagttgtaaaaa |
115 |
Q |
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| T |
5557596 |
tcaacatcatcaaacttttggaggagaagcatgcaattgttatcatatgcatgcaaaatctctagcttgaaaaagataaagaaagctaaagttgtaaaaa |
5557695 |
T |
|
| Q |
116 |
ttattatgcaagatgagtactcaatttttgcatgagtttttgcaactttagcttcatattatctttctcaagctggagcttttgttctaaagaagcaata |
215 |
Q |
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| T |
5557696 |
tcattacgtaaaatgagtactcaacttttgtatgagtttttgcaactttagcttcatattatctttctcaagctgaagtttttgttctaaagaagcgata |
5557795 |
T |
|
| Q |
216 |
tgatcaaagttgaggcaggtatggaaagacattcgaactcttctagacttgctataatagttcttcctgggttgatttgtca------nnnnnnnnnnaa |
309 |
Q |
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| T |
5557796 |
tgatcaaagttgaggcaggtatgaaaaaacattcaaactcttctagacttgctataatagttcttcctgggttgatttgtcatttttttttatttttaaa |
5557895 |
T |
|
| Q |
310 |
atgtaacttgaacaagtgttttgtcattaaactttttaatactttttaatattgatctaagttactttatattcatgaataactagtttatagtacttca |
409 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5557896 |
ttgtaacttgaacaagtgttttgtcatt----------atactttttaatattgatctaagttactttatattcatgaataactagtttatagtacttca |
5557985 |
T |
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| Q |
410 |
aatattgtttaaagccactaacttttcttcttttagactttgtaaatggttatgtatcatttttaatgtaattttgtactaataagccattctgttgctg |
509 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
5557986 |
aatattgtttaaagccactaactcttcttcttttagactttgtaaattgttatgcatcatttttaatgtaattttgtactagcaagccattttgttgctg |
5558085 |
T |
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| Q |
510 |
caactttaaatttaataccaaattcaattcaataggcaacacaatatcttaaccata |
566 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
5558086 |
caactttaaatttaatactaaattcaattcaataggcaacacaacatcttaaccata |
5558142 |
T |
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