View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16389_high_11 (Length: 331)
Name: NF16389_high_11
Description: NF16389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16389_high_11 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: scaffold0202 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 2494 - 2547
Alignment:
| Q |
267 |
cattaggctcaacttgcttaacaatggcttgagaaaagaacattagaggttcatc |
321 |
Q |
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| T |
2494 |
cattaggctcaacttgcttaacaatggcttgag-aaagaacatgagaggtacatc |
2547 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 31093850 - 31093903
Alignment:
| Q |
267 |
cattaggctcaacttgcttaacaatggcttgagaaaagaacattagaggttcatc |
321 |
Q |
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| T |
31093850 |
cattaggctcaacttgcttaacaatggcttgag-aaagaacatgagaggtacatc |
31093903 |
T |
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