View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16389_high_2 (Length: 585)
Name: NF16389_high_2
Description: NF16389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16389_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 577
Target Start/End: Complemental strand, 10801522 - 10800974
Alignment:
| Q |
19 |
attacgttcatatgttgatcaattaagtttcaagcatataagatatttcaatcccttaagttacaagtggataaataact-atttttctctatcaatctc |
117 |
Q |
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| T |
10801522 |
attacgttcatatgttgatcaattaagtttcaagcatataagatatttcaatcccttaagttacaagtg-ataaataagttaattttctctatcaatctc |
10801424 |
T |
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| Q |
118 |
ttagtatttgtaacttaattgatcaaaagtgtttaaagttaatgacttaatggaccaaagtatataacatttgtaacttaacaaccaaattgaacaagaa |
217 |
Q |
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| T |
10801423 |
ttagtatttgtaacttaattgatcaaaagtgtttaaagttaatgacttagtggaccaaagtctataacatttgtaacttaacaaccaaattgaacaagaa |
10801324 |
T |
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| Q |
218 |
aaaagtacaaagagactaaggtgtgtaacatttgtaacttaatagaacaaaattaaacc-nnnnnnnnnnnnnncaaaggatcgagaacttgctgcccaa |
316 |
Q |
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| T |
10801323 |
aaaagtacaaagagactaaggtgtgtaacatttgtaacttaatagaacaaaattaaaccaaaaaaaataaaaaacaaaggatcgagaacttgctgcccaa |
10801224 |
T |
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| Q |
317 |
ttttcaatgggaacaaaatagaggtagtannnnnnnnatgagaacatatataacatgctatgata-nnnnnnngtgtttgacattgattttattttatta |
415 |
Q |
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| T |
10801223 |
ttttcaatgggaacaaaatagaggtagtattttttttatgagaacatatataacatgctataatattttttttgtgtttgacattgattttattttatta |
10801124 |
T |
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| Q |
416 |
taacatgatcgtgatatattggctatatatagcattgctcttgatagaaaaatgttgtaatgcccccttccccattatgttgaagcaaggaaaaatgtat |
515 |
Q |
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| T |
10801123 |
taacatgatcgtgatatattgg------------ttgctcttgatagaaaaatgttgtaatgcccccttccccattatgttgaagcaaggaaaaatgtat |
10801036 |
T |
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| Q |
516 |
attttgaacgacatattaatatatctgttcataggaataacttgttactaacatagtataat |
577 |
Q |
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| T |
10801035 |
attttgaacgacatattaatatatctgttcataggaataacttgttactaacatagtataat |
10800974 |
T |
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