View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16389_high_22 (Length: 218)

Name: NF16389_high_22
Description: NF16389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16389_high_22
NF16389_high_22
[»] chr2 (3 HSPs)
chr2 (55-154)||(30731770-30731869)
chr2 (36-85)||(8979051-8979100)
chr2 (30-89)||(8995546-8995605)
[»] chr1 (5 HSPs)
chr1 (55-150)||(14669959-14670054)
chr1 (31-154)||(14664378-14664510)
chr1 (68-152)||(14676440-14676524)
chr1 (68-152)||(14683558-14683642)
chr1 (71-154)||(14654587-14654670)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 30731770 - 30731869
Alignment:
Q  55 ttttacttatgcattaatgaccactaccattaccattgattgtttctagctgatgcaagttctaatagatgaattagtgaaattctttagtgggctctat 154  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||    
T  30731770 ttttacttatgctttaatgaccattaccattaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctat 30731869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 8979051 - 8979100
Alignment:
Q  36 tttaattcttcaactttacttttacttatgcattaatgaccactaccatt 85  Q
    |||||||||||||||||| |||||| |||||||||||| ||| |||||||    
T  8979051 tttaattcttcaactttagttttacctatgcattaatggccattaccatt 8979100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 8995546 - 8995605
Alignment:
Q  30 ttaatttttaattcttcaactttacttttacttatgcattaatgaccactaccattacca 89  Q
    ||||| || ||||||||||||||| |||||  |||||||||||| |||||||||| ||||    
T  8995546 ttaatcttcaattcttcaactttagttttatctatgcattaatggccactaccatcacca 8995605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 14670054 - 14669959
Alignment:
Q  55 ttttacttatgcattaatgaccactaccattaccattgattgtttctagctgatgcaagttctaatagatgaattagtgaaattctttagtgggct 150  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| ||||||||||||    
T  14670054 ttttacttatgctttaatgaccattaccattaccattgattgtttctaggtgatgcaagttctaatggatgaattggtgaaatgctttagtgggct 14669959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 14664510 - 14664378
Alignment:
Q  31 taatttttaattcttcaactttacttttacttatgcattaatgaccacta---------ccattaccattgattgtttctagctgatgcaagttctaata 121  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||||||||         |||||| |||||||||||||||||||||||| ||| ||||     
T  14664510 taatctttaattcctcaactttagttttacttatgcattaatgaccactatgaccactaccattatcattgattgtttctagctgatgcatgttgtaatg 14664411  T
Q  122 gatgaattagtgaaattctttagtgggctctat 154  Q
    |||||||| ||||||| ||||||||| ||||||    
T  14664410 gatgaattggtgaaatgctttagtggcctctat 14664378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 14676440 - 14676524
Alignment:
Q  68 ttaatgaccactaccattaccattgattgtttctagctgatgcaagttctaatagatgaattagtgaaattctttagtgggctct 152  Q
    ||||||||| |||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  14676440 ttaatgaccgctacaatcaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctct 14676524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 14683558 - 14683642
Alignment:
Q  68 ttaatgaccactaccattaccattgattgtttctagctgatgcaagttctaatagatgaattagtgaaattctttagtgggctct 152  Q
    ||||||||| |||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  14683558 ttaatgaccgctacaatcaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctct 14683642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 14654670 - 14654587
Alignment:
Q  71 atgaccactaccattaccattgattgtttctagctgatgcaagttctaatagatgaattagtgaaattctttagtgggctctat 154  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| |||| |||||||| ||||||| ||||||||| ||||||    
T  14654670 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctat 14654587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University