View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16389_high_5 (Length: 438)
Name: NF16389_high_5
Description: NF16389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16389_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 2035888 - 2035488
Alignment:
| Q |
18 |
atcacgaaaataagatgaatttgatcatccaagagataatgaaaatctcgttaaacctttgttattgaagcaacatataacagttaaacaaaaccaataa |
117 |
Q |
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| T |
2035888 |
atcacgaaaataagatgaatttgatcatccaagagataatgaaaatctcgttaaacctttgttattgaagcaacatataacagttaaacaaaaccaataa |
2035789 |
T |
|
| Q |
118 |
agttgggagagatgtatgaagtgcttatgtaaatcgactcccaaattttgcag-ttcaatgataaattgaatgtggtgg-attgtttttcctttgtgctt |
215 |
Q |
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| T |
2035788 |
agttgggagagatgtatgaagtgcttatgtaaatcgactcccaaattttgcagtttcaatgataaattgaatgtggtggaattctttttcctttgtgctt |
2035689 |
T |
|
| Q |
216 |
ctcctatcattatatttgtgactggatttatgtatccacttgttcgaacttagaaagttggaaggatagaagattaaataccaaaagttttaaattagag |
315 |
Q |
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| T |
2035688 |
ctcctatcattatatttgtgactggatttatgtatccacttgttggaacttagaaagttggaaggatagaagattaaatacc-aaagttttgaattagag |
2035590 |
T |
|
| Q |
316 |
tcattgtagtgagaactgaaaaatctcaaagtcctaaggtggaaagttagcaccaactagtagtgttttataatagaattgtggaactccaagggcgtgc |
415 |
Q |
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| T |
2035589 |
tcattgtagtgagaactgaaaaatctcaaagtcctacggtggaaagttagcaccaactagtagtgttttgtaatagaa--gtggaaccccaagggcgtgc |
2035492 |
T |
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| Q |
416 |
tctt |
419 |
Q |
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|||| |
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| T |
2035491 |
tctt |
2035488 |
T |
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