View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16389_high_8 (Length: 359)
Name: NF16389_high_8
Description: NF16389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16389_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 23675042 - 23674820
Alignment:
| Q |
17 |
acattgctggaaaat-aaactcttctcaacaaggggaaataacattgtttgtggtaacaatggattgcacttggagatctatgaaccaatacatttttct |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||||| |||| |
|
|
| T |
23675042 |
acattgctggaaaaagaaactcttctcaacaacgggaaataacattgtttgtggtaacaatggat-gcatttgaagatctaggaaccaatacattcttct |
23674944 |
T |
|
| Q |
116 |
tataaccgtgagactaatattgaagcaatattcaaggaaat--taattatagaa-gcaagaggtattccgattgcgtcaattgaataagtgactgcaaac |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||| |||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
23674943 |
tataaccgtgagactaatattgaagcaatattcaaggaaattatagttacagaaggcaagagatattccaattgcatcaattgaataagtgactgcaaac |
23674844 |
T |
|
| Q |
213 |
ggatgcaatttgaaatttgaacaa |
236 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
23674843 |
ggatacaatttgaaatttgaacaa |
23674820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 23859769 - 23859991
Alignment:
| Q |
17 |
acattgctggaaaat-aaactcttctcaacaaggggaaataacattgtttgtggtaacaatggattgcacttggagatctatgaaccaatacatttttct |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||||| |||| |
|
|
| T |
23859769 |
acattgctggaaaaagaaactcttctcaacaacgggaaataacattgtttgtggtaacaatggat-gcatttgaagatctaggaaccaatacattcttct |
23859867 |
T |
|
| Q |
116 |
tataaccgtgagactaatattgaagcaatattcaaggaaat--taattatagaa-gcaagaggtattccgattgcgtcaattgaataagtgactgcaaac |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||| |||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
23859868 |
tataaccgtgagactaatattgaagcaatattcaaggaaattatagttacagaaggcaagagatattccaattgcatcaattgaataagtgactgcaaac |
23859967 |
T |
|
| Q |
213 |
ggatgcaatttgaaatttgaacaa |
236 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
23859968 |
ggatacaatttgaaatttgaacaa |
23859991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University