View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16389_low_10 (Length: 363)
Name: NF16389_low_10
Description: NF16389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16389_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 143 - 345
Target Start/End: Original strand, 50880155 - 50880357
Alignment:
| Q |
143 |
ttcgttatacacagtggagtatacaagaatcaacaattacataaaacaatcttttaacagtgattgaattgaatcaaacaagcatttcacaaaaacagta |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50880155 |
ttcgttatacacagtggagtatacaagaatcaacaattacataaaacaatcttttaacagtgattgaattgaatcaaacaagcatttcacaaaaacagta |
50880254 |
T |
|
| Q |
243 |
gcaataacttcttaacttcaacaaccatggcagcatcttctccaacatcctcattctactccttcccattcacaacatcccccaaatattctcacctaat |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50880255 |
gcaataacttcttaacttcaacaaccatggcagcatcttctccaacatcctcattctactccttcccattcacaacatcccccaaatattctcacctaat |
50880354 |
T |
|
| Q |
343 |
tct |
345 |
Q |
| |
|
||| |
|
|
| T |
50880355 |
tct |
50880357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 198 - 328
Target Start/End: Complemental strand, 11348269 - 11348139
Alignment:
| Q |
198 |
aacagtgattgaattgaatcaaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatcttctccaacatcctcatt |
297 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11348269 |
aacagtgattgaattgaatcaagcaaacatttcacaaaagcagtagcaataactccttaacttcaacaaccatggcagcatcttctctaacatcctcatt |
11348170 |
T |
|
| Q |
298 |
ctactccttcccattcacaacatcccccaaa |
328 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
11348169 |
ctactccttcccattcataacatcccccaaa |
11348139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 21728274 - 21728337
Alignment:
| Q |
217 |
caaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatct |
280 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21728274 |
caaacaagcatttcacaaacacagtagcaagaacttcttaacttcaacaaccatggcagcatct |
21728337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 146 - 271
Target Start/End: Complemental strand, 48081192 - 48081067
Alignment:
| Q |
146 |
gttatacacagtggagtatacaagaatcaacaattacataaaacaatcttttaacagtgattgaattgaatcaaacaagcatttcacaaaaacagtagca |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
48081192 |
gttatacacagtggagtatacaagaatcaacaattacagaaaacaatcttttaacggtgattgaattgaatcaaacaagcatttcacaaaaacagtaaca |
48081093 |
T |
|
| Q |
246 |
ataacttcttaacttcaacaaccatg |
271 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
48081092 |
ataactccttaacttcaacaaccatg |
48081067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 48080526 - 48080459
Alignment:
| Q |
265 |
aaccatggcagcatcttctccaacatcctcattctactccttcccattcacaacatcccccaaatatt |
332 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||| || |||||| | ||||||||||||||| |
|
|
| T |
48080526 |
aaccatggcatcatcttctctaacatcctcattctactcatttgcattcatagcatcccccaaatatt |
48080459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 223 - 344
Target Start/End: Complemental strand, 18852157 - 18852036
Alignment:
| Q |
223 |
agcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatcttctccaacatcctcattctactccttcccattcacaacatcc |
322 |
Q |
| |
|
|||||| ||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18852157 |
agcattgcacaacaacagtagcaatcactccttaacttcaacaaccatggcagcatcttctctaacatcctcattctactccttcccattcacaacatcc |
18852058 |
T |
|
| Q |
323 |
cccaaatattctcacctaattc |
344 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
18852057 |
cccaaatcttctcacctaattc |
18852036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 12630963 - 12631019
Alignment:
| Q |
289 |
atcctcattctactccttcccattcacaacatcccccaaatattctcacctaattct |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12630963 |
atcctcattctactccttcccattcacaacatcccccaaatcttctcacctaattct |
12631019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 36808319 - 36808393
Alignment:
| Q |
149 |
atacacagtggagtatacaagaatcaacaattacataaaacaatcttttaacagtgattgaattgaatcaaacaa |
223 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| | |||||||||| || ||||||||||||||||||||||| |
|
|
| T |
36808319 |
atacacaatggagtatacaagaatcaacaattacacagaacaatctttcaagagtgattgaattgaatcaaacaa |
36808393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 13277877 - 13277804
Alignment:
| Q |
143 |
ttcgttatacacagtggagtatacaagaatcaacaattacataaaacaatcttttaacagtgattgaattgaatcaaacaag |
224 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
13277877 |
ttcgttatacacagtggagtatacaaaaatcaacaattaccgaaaacaat--------agtgattgaattgaatcaaacaag |
13277804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University