View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16389_low_17 (Length: 278)
Name: NF16389_low_17
Description: NF16389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16389_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 36083839 - 36083578
Alignment:
| Q |
1 |
tgtttgagaagccatgcaccctatagttttttattactgcttactttggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaaccacac |
100 |
Q |
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| T |
36083839 |
tgtttgagaagccatgcaccctatagttttttattactgcttactttggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaaccacac |
36083740 |
T |
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| Q |
101 |
cacaaaatcataccatcgaaaatcaagttcacaacaaagagcaagaagaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagt |
200 |
Q |
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| T |
36083739 |
cacaaaatcataccatcgaaaatcaagttcacaacaaagagcaagaagaagcacctctccttttaactaaaccacgaccgcacaccattgaagttgaagt |
36083640 |
T |
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| Q |
201 |
tcacaacaaagaccaagaagaagaacttctcctcttaatcacaccacaaccggacaccatgg |
262 |
Q |
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| T |
36083639 |
tcacaacaaagaccaagaagaagaacttctcctcttaatcacaccacaaccggacaccatgg |
36083578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 47 - 234
Target Start/End: Complemental strand, 36149987 - 36149803
Alignment:
| Q |
47 |
tggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaaccacaccacaaaatcataccatcgaaaatcaagttcacaacaaagagcaaga |
146 |
Q |
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| T |
36149987 |
tggaaattcaagcccacaaagatcaagaagaagaacttcttcacttaaccacaccacaaaatcatacccttgaagctgaagttcacaacaaagagcaaga |
36149888 |
T |
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| Q |
147 |
agaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagttcacaacaaagaccaagaagaagaacttctcctc |
234 |
Q |
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| T |
36149887 |
aaaagcacctctacttttaactataccacatccgcacaccattgaagttcaag--cac-gcaaagacgaagaagaagcacttctcctc |
36149803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 36083921 - 36083840
Alignment:
| Q |
1 |
tgtttgagaagccatgcaccctata-gtt-ttttattactgcttactttggaagttcaagttcacaaagggcaaaaagaaga |
80 |
Q |
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||||||||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083921 |
tgtttgagaagccatgcgccctataagttcttttattactacttactttggaagttcaagttcacaaagggcaaaaagaaga |
36083840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 36083643 - 36083573
Alignment:
| Q |
125 |
aagttcacaacaaagagcaagaagaagcacctctccttttaactaaaccacaaccgcacaccattgaagtt |
195 |
Q |
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|||||||||||||||| |||||||||| || |||||| |||| | |||||||||| ||||||| |||||| |
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| T |
36083643 |
aagttcacaacaaagaccaagaagaagaacttctcctcttaatcacaccacaaccggacaccatggaagtt |
36083573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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