View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16389_low_18 (Length: 275)
Name: NF16389_low_18
Description: NF16389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16389_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 15076671 - 15076896
Alignment:
| Q |
20 |
aattcctatatcaaaaataattgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtt |
119 |
Q |
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||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
15076671 |
aattcctctatcaaaaataattgaaccaaggctttttgggactcacattccatttccttcacttgccaagtcaattcaagactccaattgtaagatagtt |
15076770 |
T |
|
| Q |
120 |
tatataagtagaaatccatttgataattttgtgtcatattggattttcattaataaaataaggtcaaaacatccatctttaccggtattaagcttggagg |
219 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |
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| T |
15076771 |
tatataagtagaaatccatttgatacttttgtgtcatattggattttcattaataaaataaggtcaaaacatccatctttaccagttttaagcttagagg |
15076870 |
T |
|
| Q |
220 |
aaacttttgaaagtttttgtaatggg |
245 |
Q |
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|||||||||||||||||||||||||| |
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| T |
15076871 |
aaacttttgaaagtttttgtaatggg |
15076896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 15171842 - 15171595
Alignment:
| Q |
20 |
aattcctatatcaaaaataattgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagt- |
118 |
Q |
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||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15171842 |
aattcctctatcaaaaataattgaaccaaggctttttgggactcacattccatttccttcacttgccaagtcaattcaagagtccaattgtaagatagta |
15171743 |
T |
|
| Q |
119 |
--ttatataagtagaaatccatttgataattttgtgtcatattggattttcattaataaaataaggtcaaaacatccatctttaccggtattaagcttgg |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | || |||||||| | |
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| T |
15171742 |
gtttatataagtagaaatccatttgatacttttgtgtcatattggagtttcgttaataaaataaggtcaaaacatccatctttatcagttttaagcttag |
15171643 |
T |
|
| Q |
217 |
aggaaacttttgaaagtttttgtaatggggtaagtctgtttggttcat |
264 |
Q |
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||||||||||||||||||||||||||||||| | || |||||||||| |
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| T |
15171642 |
aggaaacttttgaaagtttttgtaatggggttactccatttggttcat |
15171595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 15169004 - 15168868
Alignment:
| Q |
20 |
aattcctatatcaaaaataattgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15169004 |
aattcctatatcaaaaataattgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcgattcaagagtctaattgtaagatagtt |
15168905 |
T |
|
| Q |
120 |
tatataagtagaaatccatttgataattttgtgtcat |
156 |
Q |
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| T |
15168904 |
tatataagtagaaatccatttgatacttttgtgtcat |
15168868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 15165346 - 15165228
Alignment:
| Q |
146 |
ttttgtgtcatattggattttcattaataaaataaggtcaaaacatccatctttaccggtattaagcttggaggaaacttttgaaagtttttgtaatggg |
245 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| |
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| T |
15165346 |
ttttgtgtcatattggagtttcgttaataaaataaggtcaaaacatccatctttacaaattgtaagcttaaaggaaacttttgaaagtttttgtaatggg |
15165247 |
T |
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| Q |
246 |
gtaagtctgtttggttcat |
264 |
Q |
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|||| || |||||||||| |
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| T |
15165246 |
gtaactccatttggttcat |
15165228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 264
Target Start/End: Complemental strand, 4506718 - 4506486
Alignment:
| Q |
28 |
tatcaaaaataattgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataag |
127 |
Q |
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||||||| || | |||||||||| | ||||| ||||| ||||||| | |||||| |||||||||||| ||||||| |||||||| ||| |||||||| | |
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| T |
4506718 |
tatcaaacatgaatgaaccaaggctttttgg-actcatgttccattcttttcactagccaagtcaattaaagagtccaattgtaaaataatttatatatg |
4506620 |
T |
|
| Q |
128 |
tagaaatccatttgataattttgtgtcatattggattttcattaataaaataaggtcaaaacatccatctttaccggtattaagcttggaggaaactttt |
227 |
Q |
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||||||||| ||||| | ||||||||| |||| ||| ||||||||||||||||| ||| ||||||||| |||||| | || |||| |||| |
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| T |
4506619 |
tagaaatccttttgacacttttgtgtctgcttggttttatgctaataaaataaggtcaa---atcaatctttaccaactttaagcatagatgaaattttt |
4506523 |
T |
|
| Q |
228 |
gaaagtttttgtaatggggtaagtctgtttggttcat |
264 |
Q |
| |
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||||||| |||| ||||| |||||| |||||||||| |
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| T |
4506522 |
gaaagttattgtgatgggataagtccatttggttcat |
4506486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 15214705 - 15214555
Alignment:
| Q |
28 |
tatcaaaaataattgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataag |
127 |
Q |
| |
|
||||||| || | |||||||||| | ||||| |||||||| |||||| |||| | |||||||| || ||||||| |||||||| ||| |||||||| | |
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| T |
15214705 |
tatcaaatatgactgaaccaaggctttttggaactcacatgccatttccttcgttgcccaagtcagttaaagagtccaattgtaaaataatttatatatg |
15214606 |
T |
|
| Q |
128 |
tagaaatccatttgataattttgtgtcatattggattttcattaataaaat |
178 |
Q |
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|||||| |||||||||| ||||| ||||||||||||||||| || ||||| |
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| T |
15214605 |
tagaaacccatttgatacatttgtatcatattggattttcatcaacaaaat |
15214555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 15066747 - 15066876
Alignment:
| Q |
40 |
ttgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccatt |
139 |
Q |
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||||||||||| | | ||| |||||||| |||||| |||| | ||||||||||||||||||| |||||||| ||| |||||||| ||||||| ||||| |
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| T |
15066747 |
ttgaaccaaggctttatggaactcacatgccatttccttcgttgcccaagtcaattcaagagtccaattgtaaaataatttatatatgtagaaacccatt |
15066846 |
T |
|
| Q |
140 |
tgataattttgtgtcatattggattttcat |
169 |
Q |
| |
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||||| ||||| |||||||||| |||||| |
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| T |
15066847 |
tgatacatttgtatcatattggactttcat |
15066876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 1618318 - 1618179
Alignment:
| Q |
39 |
attgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccat |
138 |
Q |
| |
|
|||||||||||| | ||||| ||||| ||||| ||| |||| || |||||||||||| |||| || |||||||||||| |||| ||| ||||||| |||| |
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| T |
1618318 |
attgaaccaaggctttttggaactcatattccttttacttctctagccaagtcaattaaagaatccaattgtaagataatttacatatgtagaaacccat |
1618219 |
T |
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| Q |
139 |
ttgataattttgtgtcatattggattttcattaataaaat |
178 |
Q |
| |
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|||| | ||||||||| ||||||| |||||| || ||||| |
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| T |
1618218 |
ttgacacttttgtgtcttattggaatttcatgaacaaaat |
1618179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 1626883 - 1626744
Alignment:
| Q |
39 |
attgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccat |
138 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| || ||| || |||||||| ||| ||||||| |||||||||||| |||| ||| |||| || |||| |
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| T |
1626883 |
attgaaccaaggatttttggaactcacattcctttccattctctagccaagtctattaaagagtccaattgtaagataatttacatatgtaggaacccat |
1626784 |
T |
|
| Q |
139 |
ttgataattttgtgtcatattggattttcattaataaaat |
178 |
Q |
| |
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|||| | ||||||||| ||||||| |||||| || ||||| |
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|
| T |
1626783 |
ttgacacttttgtgtcttattggaatttcatgaacaaaat |
1626744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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