View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16389_low_19 (Length: 266)
Name: NF16389_low_19
Description: NF16389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16389_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 7503164 - 7503396
Alignment:
| Q |
18 |
tactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtcctttta-tcaagaatgata |
116 |
Q |
| |
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|||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||||| | || |||||||| | |||||||||||| |
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| T |
7503164 |
tactatcatatcaagacttgatttttagctg----ttgacacttgttttttcatgtcttt--cttaggctgttgagatgtcctttgaatcaagaatgata |
7503257 |
T |
|
| Q |
117 |
gaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaatttctcctatttgttttataattataaagaatttta |
216 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7503258 |
gaaggattataactactcaagtcaaagcccctacacaagcataataagtgtaagttctcttaaatttctcctatttgttttataattataaagaatttta |
7503357 |
T |
|
| Q |
217 |
tgttgttttttatcatccataataatctactatgttctt |
255 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
7503358 |
tgttgttttttatcatccataataatctactatgttctt |
7503396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 7530679 - 7530926
Alignment:
| Q |
1 |
tgttttgaatatattaatactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtcct |
100 |
Q |
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||||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
7530679 |
tgttttgaatatattaatactatcatatcaagactgtatgtttagct----tttgacacttgttttgtcatgtcttt--cttaggctgctgagttgtcct |
7530772 |
T |
|
| Q |
101 |
tttatcaagaatgatagaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaatttctcctatttgttttata |
200 |
Q |
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||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
7530773 |
tttttcaatgatgatagaaggattataactactcaagtcaaagcccctacacaagcataataagtgtaagttctcttaaatttctcatatttgttttata |
7530872 |
T |
|
| Q |
201 |
attataaagaat--tttatgttgttttttatcatccataataatctactatgtt |
252 |
Q |
| |
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|||||||| || |||||||||||||| ||||||||||||||| ||||||||| |
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|
| T |
7530873 |
attataaattattatttatgttgtttttcatcatccataataatttactatgtt |
7530926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 7719832 - 7719599
Alignment:
| Q |
18 |
tactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtccttt-tatcaagaatgata |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| | || |||||||| ||||||||||||| |
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| T |
7719832 |
tactatcatatcaagacttgattt----ttagcttttgacacttgttttttcatgtc--tttcttaggctgttgagatgtcctttgaatcaagaatgata |
7719739 |
T |
|
| Q |
117 |
gaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaatttctcctatttgtttta-taattataaagaatttt |
215 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
7719738 |
gaaggattataactactcaagtcaaagcccctacacaagcataataagtgtcagatctcttaaatttctcctatttgttttattaattataaagaatttt |
7719639 |
T |
|
| Q |
216 |
atgttgttttttatcatccataataatctactatgttctt |
255 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
7719638 |
atgttgttgtttatcatccataataatctactatgttctt |
7719599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 7496964 - 7497211
Alignment:
| Q |
1 |
tgttttgaatatattaatactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| |||||| |||| ||||||||| |
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|
| T |
7496964 |
tgttttgaatatattaatactatcatatcaagactgtatgtttagct----tttgacacttgttttgtcatgtcttt--cttaggatgctgagttgtcct |
7497057 |
T |
|
| Q |
101 |
tttatcaagaatgatagaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaatttctcctatttgttttata |
200 |
Q |
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|
||| |||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
7497058 |
tttttcaatgatgatagaaggattataactactcaagtcaaagcccctacacaagaataataagtgtaagttctcttaaatttctcatatttgttttata |
7497157 |
T |
|
| Q |
201 |
attataaagaat--tttatgttgttttttatcatccataataatctactatgtt |
252 |
Q |
| |
|
||||||||| || ||||||||||| || ||||||||||||||| ||||||||| |
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|
| T |
7497158 |
attataaagtattatttatgttgttgttcatcatccataataatatactatgtt |
7497211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 7522622 - 7522869
Alignment:
| Q |
1 |
tgttttgaatatattaatactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
7522622 |
tgttttgaatatattaatactatcatatcaagactgtatgtttagct----tttgacacttgttttgtcatgtcttt--cttaggctgctgagttgtcct |
7522715 |
T |
|
| Q |
101 |
tttatcaagaatgatagaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaatttctcctatttgttttata |
200 |
Q |
| |
|
||| |||| ||||||||||||| ||||||||| ||||||||||||||| |||||||||| |||||||||| ||||||||||||| ||||||||||||| |
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| T |
7522716 |
tttttcaatgatgatagaaggattataactactcaagtcaaagcccctacgcaagcataatcagtgtaagttctcttaaatttctcatatttgttttata |
7522815 |
T |
|
| Q |
201 |
attataaagaat--tttatgttgttttttatcatccataataatctactatgtt |
252 |
Q |
| |
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||||||||| || ||||||||||| || ||||||||||||||| ||||||||| |
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| T |
7522816 |
attataaagtattatttatgttgttgttcatcatccataataatatactatgtt |
7522869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 7126526 - 7126433
Alignment:
| Q |
21 |
tatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtccttttatcaagaatgatagaag |
120 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||| ||| || ||||||||||| |||||||||||| || ||||||||||||| |
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|
| T |
7126526 |
tatcatatcaagacttgatttctagct----tttgacaattgttttgtcaagtcatt--cttaggctgctgagttgtccttttttccagaatgatagaag |
7126433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 7485988 - 7486061
Alignment:
| Q |
181 |
tttctcctatttgttttataattataaagaatt--ttatgttgttttttatcatccataataatctactatgtt |
252 |
Q |
| |
|
|||||| ||||||||||| |||||||||| ||| |||||||||| | |||||||||||||||||||||||| |
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|
| T |
7485988 |
tttctcatatttgttttacaattataaagtattatttatgttgttgctcgtcatccataataatctactatgtt |
7486061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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