View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16389_low_20 (Length: 261)
Name: NF16389_low_20
Description: NF16389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16389_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 133 - 250
Target Start/End: Original strand, 44548484 - 44548601
Alignment:
| Q |
133 |
aaatcaaattaacaagtcttcaatctaactcgtctaattccctcaacaacnnnnnnnntctaactcgtctaatttcatagtatttattttattcaacagc |
232 |
Q |
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| T |
44548484 |
aaatcaaattaacaagccttcaacctaactcgtctaattccctcaacaaaaaaaaaaatctaactcgtctaatttcatagtatttattttattcaacagc |
44548583 |
T |
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| Q |
233 |
gatatatttacgtccttt |
250 |
Q |
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|||||||||||||||||| |
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| T |
44548584 |
gatatatttacgtccttt |
44548601 |
T |
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Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 44548187 - 44548276
Alignment:
| Q |
19 |
tatatttctcttag-ttttttgagttaagtttacgggaacctataaacttatattttgctatagctaaataatattccaacatttaatta |
107 |
Q |
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||||||||||| || |||||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
44548187 |
tatatttctctgagattttttgagttaagcttacggaaacctataaacttatcttttgctatagctgaataatattccaacatttaatta |
44548276 |
T |
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